Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   GGS_RS11055 Genome accession   NC_018712
Coordinates   51290..51385 (+) Length   31 a.a.
NCBI ID   WP_198455558.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 46290..56385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS00270 (GGS_0051) - 46813..48672 (+) 1860 WP_015016520.1 DUF262 domain-containing protein -
  GGS_RS00275 (GGS_0052) purB 48857..50149 (+) 1293 WP_015016521.1 adenylosuccinate lyase -
  GGS_RS00280 (GGS_0053) comR 50292..51203 (+) 912 WP_015016522.1 XRE family transcriptional regulator Regulator
  GGS_RS11055 comS 51290..51385 (+) 96 WP_198455558.1 quorum-sensing system DWW-type pheromone Regulator
  GGS_RS00285 (GGS_0054) - 51489..52622 (+) 1134 WP_042357804.1 ISAs1-like element IS1548 family transposase -
  GGS_RS00290 (GGS_0055) ruvB 52764..53762 (+) 999 WP_015057190.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  GGS_RS00295 (GGS_0056) - 53897..54328 (+) 432 WP_003059365.1 low molecular weight protein-tyrosine-phosphatase -
  GGS_RS00300 (GGS_0057) - 54357..54758 (+) 402 WP_003049089.1 MORN repeat-containing protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3929.72 Da        Isoelectric Point: 10.1669

>NTDB_id=44955 GGS_RS11055 WP_198455558.1 51290..51385(+) (comS) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MFKRYHYYFILTAMLAFKAAQMISQVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=44955 GGS_RS11055 WP_198455558.1 51290..51385(+) (comS) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGTTCAAAAGATATCACTACTATTTTATACTTACTGCTATGTTAGCATTTAAAGCAGCTCAGATGATAAGTCAAGTGGA
TTGGTGGCGTTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

61.29

100

0.613
  comS Streptococcus pyogenes MGAS315

38.71

100

0.387

Multiple sequence alignment