Detailed information NTG0044861

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: GGS_RS00290
• Genome accession: NC_018712
• Coordinates: 52764..53762 (+)
• Length: 332 a.a.
• NCBI ID: WP_015057190.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. equisimilis RE378
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 47764..58762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GGS_RS00275 (GGS_0052)	purB	48857..50149 (+)	1293	WP_015016521.1	adenylosuccinate lyase	-
GGS_RS00280 (GGS_0053)	comR	50292..51203 (+)	912	WP_015016522.1	XRE family transcriptional regulator	Regulator
GGS_RS11055	comS	51290..51385 (+)	96	WP_198455558.1	quorum-sensing system DWW-type pheromone	Regulator
GGS_RS00285 (GGS_0054)	-	51489..52622 (+)	1134	WP_042357804.1	ISAs1-like element IS1548 family transposase	-
GGS_RS00290 (GGS_0055)	ruvB	52764..53762 (+)	999	WP_015057190.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
GGS_RS00295 (GGS_0056)	-	53897..54328 (+)	432	WP_003059365.1	low molecular weight protein-tyrosine-phosphatase	-
GGS_RS00300 (GGS_0057)	-	54357..54758 (+)	402	WP_003049089.1	MORN repeat-containing protein	-
GGS_RS00305 (GGS_0058)	-	54755..56530 (+)	1776	WP_003059359.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37274.73 Da
• Isoelectric Point: 4.5556

>NTDB_id=44861 GGS_RS00290 WP_015057190.1 52764..53762(+) (ruvB) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MARILDNDVMGDEELVERTLRPQYLREYIGQDKVKEQLTIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQEADLTEIVERTADIFDMEIVHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVIT
AQITDKALTMLDVDREGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVATEK
AYRHLGYPYPSK

Nucleotide

• Length: 999 bp

>NTDB_id=44861 GGS_RS00290 WP_015057190.1 52764..53762(+) (ruvB) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGGCTAGAATTTTAGATAATGATGTAATGGGGGATGAAGAACTTGTTGAGCGAACGCTTCGTCCGCAGTATTTACGTGA
GTACATTGGGCAAGATAAGGTTAAGGAACAATTAACCATTTTTATTGAAGCGGCTAAGCTCCGTGATGAATCTTTAGATC
ATGTGTTGTTGTTTGGCCCTCCAGGTTTAGGGAAAACCACAATGGCATTTGTGATTGCTAATGAATTAGGGGTTAACTTG
AAGCAAACTTCAGGACCAGCGATTGAGAAGGCTGGTGATTTGGTAGCTATTTTGAATGATCTGGAACCAGGAGATGTGCT
CTTTATTGATGAAATTCATCGTCTGCCTATGGCAGTCGAAGAAGTATTGTACAGTGCTATGGAAGATTTTTACATCGACA
TTATGATTGGTGCTGGGGACACTAGTCGAAGTGTTCATTTGGATTTGCCACCTTTTACATTGATTGGAGCTACAACACGA
GCTGGGATGTTATCAAATCCTTTGCGAGCTCGATTTGGCATTACTGGACACATGGAGTATTATCAGGAAGCTGATTTGAC
TGAAATTGTCGAACGAACAGCCGATATTTTTGACATGGAAATTGTTCACGAAGCGGCTCAAGAGTTAGCTTGCCGTAGTC
GGGGAACACCGCGTATTGCTAATAGATTGTTAAAGCGGGTACGTGATTATGCTCAGATTGTTGGAGATGGCGTCATCACG
GCTCAGATTACAGACAAAGCCCTAACCATGCTTGATGTTGATCGAGAAGGTCTTGATTATGTAGATCAGAAGATTTTACG
CACCATGATTGAAATGTATCAGGGTGGACCTGTTGGGTTAGGCACTTTATCAGTTAATATTGCAGAAGAACGTGATACAG
TTGAAGACATGTACGAACCTTATCTGATTCAAAAAGGATTTCTAATGCGTACACGAACTGGTCGTGTGGCGACGGAAAAA
GCCTATCGTCATCTTGGTTATCCATATCCGTCTAAGTAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.759	100	0.898
ruvB	Streptococcus pneumoniae R6	89.458	100	0.895
ruvB	Streptococcus pneumoniae D39	89.458	100	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.061	98.795	0.593
ruvB	Helicobacter pylori 26695	50.613	98.193	0.497
ruvB	Synechocystis sp. PCC 6803	50	95.783	0.479