Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   GGS_RS10355 Genome accession   NC_018712
Coordinates   2135856..2136962 (+) Length   368 a.a.
NCBI ID   WP_003061139.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2130856..2141962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS10330 (GGS_1960) pgsA 2130966..2131508 (-) 543 WP_003062173.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GGS_RS10335 (GGS_1961) - 2131522..2132553 (-) 1032 WP_003061371.1 helix-turn-helix domain-containing protein -
  GGS_RS10340 (GGS_1962) - 2132603..2133886 (-) 1284 WP_015017517.1 pitrilysin family protein -
  GGS_RS10345 (GGS_1963) - 2133888..2135132 (-) 1245 WP_015017518.1 pitrilysin family protein -
  GGS_RS10350 (GGS_1964) yaaA 2135441..2135854 (+) 414 WP_003055132.1 S4 domain-containing protein YaaA -
  GGS_RS10355 (GGS_1965) recF 2135856..2136962 (+) 1107 WP_003061139.1 DNA replication/repair protein RecF Machinery gene
  GGS_RS10360 (GGS_1966) - 2137019..2137882 (-) 864 WP_003055126.1 GRP family sugar transporter -
  GGS_RS10365 (GGS_1967) guaB 2138094..2139575 (-) 1482 WP_003060436.1 IMP dehydrogenase -
  GGS_RS10370 (GGS_1968) trpS 2139791..2140813 (-) 1023 WP_042358028.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41878.74 Da        Isoelectric Point: 7.8298

>NTDB_id=44952 GGS_RS10355 WP_003061139.1 2135856..2136962(+) (recF) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRVSGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGTRVMEHRIDFINALEKEANTHHQAISNGLENLSLSYQSSVVFDKRTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLVKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTIQVDSEIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=44952 GGS_RS10355 WP_003061139.1 2135856..2136962(+) (recF) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCATCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTGTTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGCGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGGGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAACCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAGCAAATTGATGCGGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAAC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCATTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAATCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAGAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGTGTGGGCCCACATCGCGATGACTTAGCTTTTTA
CATTAACGGAATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAGTGAAGGCCTTGACTGGAGATAATCCTATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCATTCAAGTTGATTCTGAAATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-361)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.912

98.913

0.622
  recF Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.462

Multiple sequence alignment