Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FOC61_RS07960 Genome accession   NZ_CP053957
Coordinates   1623969..1624841 (-) Length   290 a.a.
NCBI ID   WP_002453082.1    Uniprot ID   -
Organism   Staphylococcus capitis strain FDAARGOS_753     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1618969..1629841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC61_RS07945 (FOC61_07950) xerC 1619256..1620146 (-) 891 WP_002453085.1 tyrosine recombinase XerC -
  FOC61_RS07950 (FOC61_07955) trmFO 1620383..1621690 (-) 1308 WP_002453084.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FOC61_RS07955 (FOC61_07960) topA 1621716..1623791 (-) 2076 WP_029625697.1 type I DNA topoisomerase -
  FOC61_RS07960 (FOC61_07965) dprA 1623969..1624841 (-) 873 WP_002453082.1 DNA-processing protein DprA Machinery gene
  FOC61_RS07965 (FOC61_07970) sucD 1625330..1626238 (-) 909 WP_002453081.1 succinate--CoA ligase subunit alpha -
  FOC61_RS07970 (FOC61_07975) sucC 1626260..1627426 (-) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  FOC61_RS07975 (FOC61_07980) - 1627534..1628304 (-) 771 WP_002453080.1 ribonuclease HII -
  FOC61_RS07980 (FOC61_07985) ylqF 1628306..1629172 (-) 867 WP_002453079.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33453.46 Da        Isoelectric Point: 9.1538

>NTDB_id=449490 FOC61_RS07960 WP_002453082.1 1623969..1624841(-) (dprA) [Staphylococcus capitis strain FDAARGOS_753]
MIQHILLKLYWANFTTTQIHQFIKDYPEVISESPPTQKEMIEDWTIRQTTSTLKKKFNLFKSLDTEVLLQEMSKKNLKFL
TYFDKNYPQLLKEIYDFPYIIFYKGNKQLFNYPHTLAVIGSRKSTSYTTQALEYLFPSFKQLKMTIISGLAYGADSVAHQ
VALKNQLPTIGVLGFGHSYHYPKSTFKTRESVEREGLVISEYPPHSPISRYKFPERNRLISGLARGLLITEAEEISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDESSILSDYNF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=449490 FOC61_RS07960 WP_002453082.1 1623969..1624841(-) (dprA) [Staphylococcus capitis strain FDAARGOS_753]
GTGATCCAACATATTTTATTGAAGCTCTATTGGGCTAATTTCACCACCACTCAAATTCATCAATTCATTAAAGATTACCC
TGAAGTTATATCAGAAAGCCCTCCAACTCAAAAAGAAATGATTGAAGATTGGACTATAAGACAAACCACCTCCACATTGA
AGAAAAAATTCAACTTATTTAAATCACTTGATACAGAAGTTCTACTTCAAGAAATGTCAAAAAAGAACCTCAAATTTTTA
ACTTACTTTGATAAAAATTATCCTCAATTACTTAAAGAAATTTATGATTTTCCATATATAATATTTTACAAAGGAAATAA
ACAACTATTTAACTATCCGCATACTTTAGCTGTTATAGGATCAAGAAAGTCCACTTCATATACCACACAAGCATTAGAAT
ATCTATTTCCCTCATTTAAACAACTAAAAATGACGATTATATCAGGATTAGCATACGGTGCAGATAGTGTAGCTCATCAA
GTTGCACTAAAAAATCAACTGCCAACAATAGGAGTTCTTGGTTTTGGACATTCATATCATTATCCTAAATCAACTTTTAA
AACAAGAGAGAGTGTCGAACGAGAAGGGCTCGTTATAAGTGAGTATCCGCCGCATTCTCCTATATCCAGATATAAATTTC
CAGAAAGAAATAGATTGATTAGTGGTCTCGCTCGAGGTTTATTAATTACAGAAGCAGAGGAAATAAGTGGTAGTCAAATA
ACAGTAGATTGCGCTTTAGAACAAAATCGAAATGTATATGTTTTACCAGGATCAATGTTCAATCCTATGACCAAAAGTAA
TTTACTTAGGCTTCAAGAGGGTGCACAAGTAGTTTTAGATGAAAGTAGTATCCTTTCGGACTACAATTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

58.681

99.31

0.583
  dprA Staphylococcus aureus MW2

58.681

99.31

0.583