Detailed information NTG0449408

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: STAVA116_RS08950
• Genome accession: NZ_CP065498
• Coordinates: 1723638..1724738 (+)
• Length: 366 a.a.
• NCBI ID: WP_087010234.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain AVA116
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1718638..1729738

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STAVA116_RS08925 (STAVA116_08900)	pgsA	1719180..1719722 (-)	543	WP_087010230.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
STAVA116_RS08930 (STAVA116_08905)	-	1719735..1720592 (-)	858	WP_002947779.1	helix-turn-helix domain-containing protein	-
STAVA116_RS08935 (STAVA116_08910)	-	1720651..1721928 (-)	1278	WP_347229871.1	pitrilysin family protein	-
STAVA116_RS08940 (STAVA116_08915)	-	1721930..1723180 (-)	1251	WP_087010232.1	pitrilysin family protein	-
STAVA116_RS08945 (STAVA116_08920)	yaaA	1723258..1723635 (+)	378	WP_087010233.1	S4 domain-containing protein YaaA	-
STAVA116_RS08950 (STAVA116_08925)	recF	1723638..1724738 (+)	1101	WP_087010234.1	DNA replication/repair protein RecF	Machinery gene
STAVA116_RS08955 (STAVA116_08930)	guaB	1724907..1726388 (-)	1482	WP_011227627.1	IMP dehydrogenase	-
STAVA116_RS08960 (STAVA116_08935)	trpS	1726565..1727587 (-)	1023	WP_087010235.1	tryptophan--tRNA ligase	-
STAVA116_RS08965 (STAVA116_08940)	-	1728015..1728887 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42172.31 Da
• Isoelectric Point: 8.9570

>NTDB_id=449408 STAVA116_RS08950 WP_087010234.1 1723638..1724738(+) (recF) [Streptococcus thermophilus strain AVA116]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLANFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=449408 STAVA116_RS08950 WP_087010234.1 1723638..1724738(+) (recF) [Streptococcus thermophilus strain AVA116]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTGAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCAATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.363	97.814	0.639
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432