Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FOC93_RS29130 Genome accession   NZ_CP053951
Coordinates   5029859..5030293 (+) Length   144 a.a.
NCBI ID   WP_000811494.1    Uniprot ID   A0A9Q6M5X1
Organism   Bacillus cereus strain FDAARGOS_799     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5024859..5035293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC93_RS29110 (FOC93_29120) - 5025773..5026936 (-) 1164 WP_000434578.1 aminotransferase A -
  FOC93_RS29115 (FOC93_29125) - 5027059..5027259 (-) 201 WP_000929277.1 hypothetical protein -
  FOC93_RS29120 (FOC93_29130) kinB 5027570..5028844 (+) 1275 WP_000420369.1 sporulation sensor histidine kinase KinB -
  FOC93_RS29125 (FOC93_29135) - 5028883..5029632 (-) 750 WP_000388471.1 DUF3967 domain-containing protein -
  FOC93_RS29130 (FOC93_29140) nucA/comI 5029859..5030293 (+) 435 WP_000811494.1 DNA-entry nuclease Machinery gene
  FOC93_RS29135 (FOC93_29145) comJ 5030330..5030719 (+) 390 WP_000424030.1 competence protein ComJ -
  FOC93_RS29140 (FOC93_29150) metE 5030758..5033046 (-) 2289 WP_172852555.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  FOC93_RS29145 (FOC93_29155) - 5033558..5034115 (-) 558 WP_000062063.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16054.43 Da        Isoelectric Point: 8.4331

>NTDB_id=449364 FOC93_RS29130 WP_000811494.1 5029859..5030293(+) (nucA/comI) [Bacillus cereus strain FDAARGOS_799]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=449364 FOC93_RS29130 WP_000811494.1 5029859..5030293(+) (nucA/comI) [Bacillus cereus strain FDAARGOS_799]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGGAAA
TTGTCGTTAGCACCATATCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGCGGAGCAGGCTCTTGGGTAGGGAATAAGTTAGATAAATACC
CAGATGGTACGCGAGTAAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549