Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   STAVA116_RS06215 Genome accession   NZ_CP065498
Coordinates   1207151..1207795 (-) Length   214 a.a.
NCBI ID   WP_002951384.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA116     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1202151..1212795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS06190 (STAVA116_06160) - 1204248..1205246 (-) 999 WP_087010055.1 NAD(P)/FAD-dependent oxidoreductase -
  STAVA116_RS06195 (STAVA116_06165) trmD 1205248..1205967 (-) 720 WP_011226285.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  STAVA116_RS06200 (STAVA116_06170) rimM 1205957..1206475 (-) 519 WP_011226286.1 ribosome maturation factor RimM -
  STAVA116_RS06215 (STAVA116_06185) vraR 1207151..1207795 (-) 645 WP_002951384.1 response regulator transcription factor Regulator
  STAVA116_RS06220 (STAVA116_06190) - 1207785..1208795 (-) 1011 WP_087010056.1 sensor histidine kinase -
  STAVA116_RS06225 (STAVA116_06195) liaF 1208792..1209490 (-) 699 WP_011226289.1 cell wall-active antibiotics response protein LiaF -
  STAVA116_RS06230 - 1209745..1209912 (-) 168 WP_224103618.1 potassium channel family protein -
  STAVA116_RS06235 (STAVA116_06205) stkP/pknB 1210550..1212421 (-) 1872 WP_087010057.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24048.39 Da        Isoelectric Point: 4.5864

>NTDB_id=449364 STAVA116_RS06215 WP_002951384.1 1207151..1207795(-) (vraR) [Streptococcus thermophilus strain AVA116]
MSNKINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAENGREGVDLALELRPDVVVMDLVMPELDGVQATLELLKEWPEAK
ILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPNLHDDLTARERDILALL
AKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVSQDDE

Nucleotide


Download         Length: 645 bp        

>NTDB_id=449364 STAVA116_RS06215 WP_002951384.1 1207151..1207795(-) (vraR) [Streptococcus thermophilus strain AVA116]
ATGTCGAATAAGATTAATGTAATTTTGGTAGATGACCATGAAATGGTTCGTTTAGGCCTTAAGAGTTTCTTGAATCTCCA
AGGAGATGTAGAAGTGGTTGGAGAGGCAGAAAACGGCCGTGAGGGTGTCGATCTTGCCCTGGAGCTACGACCAGATGTCG
TTGTTATGGACCTTGTTATGCCTGAGCTAGATGGTGTTCAGGCGACTTTGGAATTGCTAAAAGAATGGCCTGAAGCTAAG
ATTCTAGTTTTGACCAGCTATTTGGACAATGAAAAAATTTATCCAGTCATTGAAGCTGGCGCCAAAGGCTATATGCTTAA
AACGAGCAGTGCAGCAGAGATTCTAAATAGTATCCGTAAGGTTTACCGTGGAGAGGAAGCTATCGAAACTGAGGTAGACA
ATAAGATTAAATACCATGATAGTCACCCGAACTTACATGATGACTTGACCGCGCGCGAACGTGATATCTTAGCCCTCCTA
GCTAAAGGCTATGACAATCAAACCATTGCTAACGAACTTTTTATTTCTTTAAAAACCGTCAAGACTCATGTGTCTAATAT
CCTTGGGAAATTAAATGTTGATGACCGTACTCAGGCTGTAGTTTATGCCTTTAGACATCATCTGGTTTCACAGGATGATG
AATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.485

96.262

0.486
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.379