Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   G4D73_RS11540 Genome accession   NZ_CP053947
Coordinates   2476328..2476963 (-) Length   211 a.a.
NCBI ID   WP_213686818.1    Uniprot ID   -
Organism   Acinetobacter sp. WY4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2471328..2481963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D73_RS11505 mlaE 2471472..2472251 (+) 780 WP_004281531.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  G4D73_RS11510 - 2472251..2472928 (+) 678 WP_213686816.1 outer membrane lipid asymmetry maintenance protein MlaD -
  G4D73_RS11515 - 2472947..2473585 (+) 639 WP_213686817.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  G4D73_RS11520 - 2473601..2473891 (+) 291 WP_004281528.1 STAS domain-containing protein -
  G4D73_RS11525 - 2474135..2475148 (-) 1014 WP_005248226.1 CorA family divalent cation transporter -
  G4D73_RS11530 - 2475301..2475891 (+) 591 WP_213687751.1 TIGR00730 family Rossman fold protein -
  G4D73_RS11535 - 2475922..2476323 (+) 402 WP_004732301.1 NUDIX hydrolase -
  G4D73_RS11540 comF 2476328..2476963 (-) 636 WP_213686818.1 ComF family protein Machinery gene
  G4D73_RS11545 recG 2476950..2478995 (-) 2046 WP_213686819.1 ATP-dependent DNA helicase RecG -
  G4D73_RS11550 - 2479029..2479832 (+) 804 WP_213686820.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24370.51 Da        Isoelectric Point: 9.2585

>NTDB_id=449315 G4D73_RS11540 WP_213686818.1 2476328..2476963(-) (comF) [Acinetobacter sp. WY4]
MPMFKLLQHGKSWLTHLQPCQLCLTDHQSIHSVCEDCWRQLPWAHQTIQRQEMQFQIACDYAYPMDRLIQLFKYEQKLHL
QNLLAGVLLSLDLPKVSAIVPMPISNERLAERGYNQSLVLAKHVAKQLNVPIWQPVRRMKQHSQKGLSRLERIEDIQSQF
QISTISKLRYRRVLIIDDVVTTGSSIRALSQTLEQLGCQKVYAACLAGAQI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=449315 G4D73_RS11540 WP_213686818.1 2476328..2476963(-) (comF) [Acinetobacter sp. WY4]
ATGCCTATGTTTAAATTACTGCAACATGGAAAATCCTGGCTGACCCACTTACAGCCCTGCCAGCTCTGTCTGACCGATCA
TCAGTCCATTCATTCAGTCTGTGAAGATTGCTGGCGACAATTACCCTGGGCACATCAAACCATTCAACGGCAGGAAATGC
AGTTCCAGATTGCCTGCGACTATGCTTACCCGATGGACCGGCTGATTCAACTGTTTAAATATGAACAGAAGCTGCATTTG
CAAAATTTACTGGCAGGTGTGCTGTTAAGTTTAGACCTACCTAAAGTCAGTGCGATAGTACCGATGCCGATCTCGAATGA
GCGTCTGGCTGAGCGCGGTTATAATCAATCTCTAGTGCTGGCCAAACATGTGGCAAAACAGTTGAATGTACCCATCTGGC
AACCTGTTCGACGAATGAAACAACACTCGCAAAAGGGCCTAAGCCGGCTGGAGCGGATTGAAGACATCCAATCACAATTC
CAGATCAGTACCATTTCCAAGCTGCGTTACCGTCGGGTGCTGATTATTGATGATGTGGTGACGACCGGCAGCTCGATTCG
AGCACTGAGCCAAACACTTGAACAACTGGGCTGTCAAAAAGTTTATGCAGCCTGTCTGGCAGGTGCTCAAATCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.386

98.104

0.592
  comF Acinetobacter baumannii D1279779

59.903

98.104

0.588