Detailed information NTG0449305

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: ST4067_RS09435
• Genome accession: NZ_CP065496
• Coordinates: 1807885..1808985 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain 4067
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1802885..1813985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST4067_RS09410 (ST4067_09455)	pgsA	1803427..1803969 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
ST4067_RS09415 (ST4067_09460)	-	1803982..1804839 (-)	858	WP_014608803.1	helix-turn-helix domain-containing protein	-
ST4067_RS09420 (ST4067_09465)	yfmH	1804898..1806175 (-)	1278	WP_011226704.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
ST4067_RS09425 (ST4067_09470)	yfmF	1806177..1807427 (-)	1251	WP_232975904.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
ST4067_RS09430 (ST4067_09475)	yaaA	1807505..1807882 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
ST4067_RS09435 (ST4067_09480)	recF	1807885..1808985 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
ST4067_RS09440 (ST4067_09485)	guaB	1809154..1810635 (-)	1482	WP_011227627.1	IMP dehydrogenase	-
ST4067_RS09445 (ST4067_09490)	trpS	1810812..1811834 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
ST4067_RS09450 (ST4067_09495)	-	1812261..1813133 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=449305 ST4067_RS09435 WP_002947786.1 1807885..1808985(+) (recF) [Streptococcus thermophilus strain 4067]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=449305 ST4067_RS09435 WP_002947786.1 1807885..1808985(+) (recF) [Streptococcus thermophilus strain 4067]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAT
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432