Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilS   Type   Regulator
Locus tag   G4D73_RS10750 Genome accession   NZ_CP053947
Coordinates   2313518..2315083 (-) Length   521 a.a.
NCBI ID   WP_180086770.1    Uniprot ID   -
Organism   Acinetobacter sp. WY4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 2308518..2320083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D73_RS10735 gpmI 2309328..2310875 (+) 1548 WP_213686737.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  G4D73_RS10740 - 2310906..2312078 (+) 1173 WP_213686738.1 S41 family peptidase -
  G4D73_RS10745 pilR 2312079..2313503 (-) 1425 WP_180086769.1 sigma-54-dependent transcriptional regulator Regulator
  G4D73_RS10750 pilS 2313518..2315083 (-) 1566 WP_180086770.1 sensor histidine kinase Regulator
  G4D73_RS10755 - 2315106..2315741 (-) 636 WP_004281059.1 response regulator -
  G4D73_RS10760 - 2315961..2317022 (+) 1062 WP_005101483.1 serine hydrolase -
  G4D73_RS10765 thrC 2317080..2318219 (-) 1140 WP_004281061.1 threonine synthase -
  G4D73_RS10770 - 2318276..2319583 (-) 1308 WP_034605826.1 homoserine dehydrogenase -

Sequence


Protein


Download         Length: 521 a.a.        Molecular weight: 59526.74 Da        Isoelectric Point: 6.1853

>NTDB_id=449305 G4D73_RS10750 WP_180086770.1 2313518..2315083(-) (pilS) [Acinetobacter sp. WY4]
MAQQKNYAELNQYHLGIWYSAYRLLISTGLLLIFLLTYPELTTDYQYPQLYYYALGIGVAINTVQLFALKWIRRLIQPQL
IMIFFSDVCVLSLLTLASDGPNLQIGLLFVITIFSASLLLDAKKALVVTLVAVISVIYQHFIGSIFAFSSLSNISNSALL
AFLFFVVYGTGQIAVRRFQILENLNFSQSLELHRLQNINRYILEQIETGYLVLDENYHVVLSNPAACNLLGIESKYGHEK
FTLSQSQPDLFELIHFETLENGERFQFESQQSRYNIHVQVQKLIVPHQTLMLLVLQDAKKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSETEQQQLLQQMIGRQATRIDRIIQDTLNMVKNKETHPIPIHLNEFIPLFIQEDLADICD
QIQFNIDIPLVIQFDEAQFRQILINLIRNAIRHNSADAAYIQLNVHPYEHRVWIDVRDFGSGVAVHDQALLFKPFFSTSI
SGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITL

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=449305 G4D73_RS10750 WP_180086770.1 2313518..2315083(-) (pilS) [Acinetobacter sp. WY4]
ATGGCACAACAAAAAAACTATGCTGAACTGAATCAATATCATCTCGGTATCTGGTATAGCGCTTATCGCTTGCTGATCAG
CACCGGCCTACTGCTGATTTTTCTGCTGACCTACCCCGAACTCACCACCGATTATCAATATCCGCAGCTGTATTATTATG
CGCTGGGAATCGGGGTTGCGATCAATACCGTACAGCTGTTTGCGCTGAAATGGATCAGACGACTGATCCAGCCGCAGCTG
ATCATGATTTTCTTTAGCGATGTCTGCGTTCTAAGTTTGCTGACTTTGGCCAGTGATGGTCCTAATCTGCAAATCGGGCT
GCTGTTTGTGATTACCATCTTTTCTGCATCTTTATTATTAGATGCAAAAAAGGCCTTAGTTGTCACGCTGGTTGCTGTTA
TCAGCGTTATTTATCAGCATTTTATCGGCAGTATTTTTGCATTTTCATCACTCAGTAATATCAGTAATAGCGCCCTGCTG
GCCTTTTTGTTTTTTGTGGTCTATGGCACCGGACAAATTGCCGTGCGGCGTTTTCAGATTTTGGAAAATCTGAATTTTTC
TCAATCGCTGGAACTGCATCGCTTACAGAATATTAACCGCTATATTCTGGAGCAGATCGAAACCGGTTATCTGGTGCTGG
ATGAAAACTACCATGTGGTACTCAGTAATCCTGCCGCCTGTAATCTTCTTGGAATTGAGTCCAAATACGGCCATGAGAAA
TTTACTTTATCTCAATCACAGCCAGATTTATTTGAACTGATCCATTTTGAAACGCTAGAAAATGGTGAGCGCTTTCAGTT
TGAATCCCAGCAAAGTCGCTATAATATTCATGTGCAGGTGCAAAAACTGATTGTGCCGCATCAGACTCTAATGCTACTGG
TGTTACAGGATGCCAAAAAACTGAATCAGCAGGTGCAGCAACTTAAACTTGCTGCACTGGGTCAACTCTCAGCCAGTATT
GCCCATGAAATTCGCAACCCCTTGGCGGCCATTGTGCAGGCCAATGATTTGTATCTGGACTCAGAAACTGAACAGCAACA
GCTACTCCAGCAGATGATTGGCCGACAGGCGACCCGGATTGACCGGATTATTCAGGACACGCTGAATATGGTCAAAAATA
AAGAAACCCACCCGATACCGATTCATCTCAATGAATTTATCCCGTTATTTATCCAGGAAGATCTGGCCGATATTTGCGAT
CAGATTCAATTTAATATTGATATCCCGCTAGTGATTCAGTTTGATGAAGCACAATTCCGGCAAATCCTGATTAATCTGAT
TCGTAATGCCATTCGTCACAATTCAGCAGATGCAGCCTATATTCAGCTGAATGTGCATCCTTATGAACATCGGGTCTGGA
TTGATGTACGGGATTTTGGCTCTGGCGTAGCCGTACATGATCAAGCTCTATTGTTCAAACCCTTTTTTAGCACATCGATT
AGTGGTACCGGATTAGGATTGTATTTATCACATAGTTTTTGCGAAGCAAATCAGGCACAATTAAACTATATACAACAAGA
ACAGGGCGCATGCTTTCGCATCAGCTGTCAACGTATTACGCTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.03

96.929

0.553