Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FOC66_RS02810 Genome accession   NZ_CP053939
Coordinates   599902..600705 (+) Length   267 a.a.
NCBI ID   WP_003746438.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 594902..605705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS02780 (FOC66_02780) - 595144..595668 (-) 525 WP_003746425.1 RDD family protein -
  FOC66_RS02785 (FOC66_02785) - 595760..596179 (-) 420 WP_003746427.1 hypothetical protein -
  FOC66_RS02790 (FOC66_02790) holA 596326..597327 (-) 1002 WP_003746429.1 DNA polymerase III subunit delta -
  FOC66_RS02795 (FOC66_02795) lptE 597327..597806 (-) 480 WP_003746431.1 LPS assembly lipoprotein LptE -
  FOC66_RS02800 (FOC66_02800) pgeF 597927..598697 (-) 771 WP_003746433.1 peptidoglycan editing factor PgeF -
  FOC66_RS02805 (FOC66_02805) rluD 598779..599903 (-) 1125 WP_003746436.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FOC66_RS02810 (FOC66_02810) comL 599902..600705 (+) 804 WP_003746438.1 outer membrane protein assembly factor BamD Machinery gene
  FOC66_RS02815 (FOC66_02815) - 601028..602185 (+) 1158 WP_003746440.1 ATP phosphoribosyltransferase regulatory subunit -
  FOC66_RS02820 (FOC66_02820) - 602229..603527 (+) 1299 WP_003746442.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31018.97 Da        Isoelectric Point: 7.9862

>NTDB_id=449242 FOC66_RS02810 WP_003746438.1 599902..600705(+) (comL) [Neisseria mucosa strain FDAARGOS_758]
MKKILLVVSLGLALSACANKGTIDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIARFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVQRYPNS
KYAADATERMAKLVDALGGNEMSVARYYMKRGAYVAAANRAQKIVSRYQNTRYVEEALAMMELAYKKLDKPQLAADTHRV
LETNFPQSPFLQHEWRSDDMPWWRYWR

Nucleotide


Download         Length: 804 bp        

>NTDB_id=449242 FOC66_RS02810 WP_003746438.1 599902..600705(+) (comL) [Neisseria mucosa strain FDAARGOS_758]
ATGAAAAAAATTCTTTTAGTAGTTTCTTTAGGTTTGGCACTGAGTGCCTGCGCAAATAAAGGCACAATCGATAAAGACGC
CCAAATTACTCAAGATTGGAGTGTGGAAAAGCTTTATGCCGAAGCGCAAGACGAGTTGAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTAGAATCCCGTTTTCCAAACGGCCGCTATGCACAGCAGTCCCAGTTGGATACGGCGTAT
GCCTATTATAAAGACGATGAGCCGGAAAAAGCCTTGGCTGCCATCGCGCGCTTCCAACGCCATCATCCGCAACATCCGAA
TATGGACTACGCGCTGTACTTGAAAGGCTTGGTCCTGTTTAACGAAGACCAGTCTTTCTTGAACAAGCTGGCTTCCCAAG
ACTGGTCCGACCGCGATCCGAAAGCCAACCGCGATGCTTATCAGGCGTTTGCAGAGTTGGTGCAACGTTATCCAAACAGC
AAATACGCTGCCGATGCAACCGAACGCATGGCCAAGCTGGTGGACGCTTTGGGCGGTAACGAAATGTCTGTGGCGCGTTA
TTACATGAAACGCGGTGCTTATGTCGCAGCGGCCAACCGTGCGCAAAAAATCGTTAGCCGTTACCAAAATACCCGTTACG
TCGAAGAAGCTTTGGCGATGATGGAATTGGCATACAAAAAACTGGACAAGCCGCAACTGGCTGCCGATACACACCGCGTT
TTGGAAACCAACTTCCCGCAAAGCCCGTTCTTGCAACACGAATGGCGATCTGACGATATGCCTTGGTGGCGTTACTGGCG
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

88.346

99.625

0.88
  comL Neisseria gonorrhoeae MS11

87.594

99.625

0.873