Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GGS_RS07040 Genome accession   NC_018712
Coordinates   1435569..1436165 (-) Length   198 a.a.
NCBI ID   WP_015017206.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1430569..1441165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS07025 (GGS_1332) - 1431979..1432674 (-) 696 WP_003057977.1 TIGR02206 family membrane protein -
  GGS_RS07030 (GGS_1333) murF 1432778..1434145 (-) 1368 WP_014612439.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  GGS_RS07035 (GGS_1334) - 1434351..1435397 (-) 1047 WP_003060500.1 D-alanine--D-alanine ligase -
  GGS_RS07040 (GGS_1335) recR 1435569..1436165 (-) 597 WP_015017206.1 recombination mediator RecR Machinery gene
  GGS_RS07045 (GGS_1336) pbp2b 1436177..1438231 (-) 2055 WP_015017207.1 penicillin-binding protein PBP2B -
  GGS_RS07050 (GGS_1337) - 1438338..1439108 (-) 771 WP_003051604.1 formate/nitrite transporter family protein -
  GGS_RS07055 (GGS_1338) - 1439235..1439777 (-) 543 WP_003053939.1 hypothetical protein -
  GGS_RS07060 (GGS_1339) - 1439879..1440400 (-) 522 WP_012767268.1 transcription repressor NadR -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21657.78 Da        Isoelectric Point: 4.6595

>NTDB_id=44919 GGS_RS07040 WP_015017206.1 1435569..1436165(-) (recR) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MFYPTPIAKLIESYSKLPGIGVKTATRLAFYTIGMSDEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCSICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVTEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=44919 GGS_RS07040 WP_015017206.1 1435569..1436165(-) (recR) [Streptococcus dysgalactiae subsp. equisimilis RE378]
GTGTTTTACCCAACCCCTATTGCAAAATTAATCGAAAGTTATTCCAAGCTCCCAGGAATTGGGGTAAAAACGGCAACTAG
ACTTGCCTTTTACACAATTGGAATGTCTGACGAGGATGTCAATGACTTTGCTAAAAATTTATTGGCAGCTAAAAGAGAAT
TAACCTATTGTTCCATTTGTGGCAACCTGACAGATGATGATCCTTGTTCTATCTGCACAGATACAAGTCGTGACCAGACA
ACGATTCTTGTGGTGGAAGATGCTAAAGATGTTTCTGCTATGGAAAAAATTCAAGAGTATCATGGTTATTACCATGTGCT
GCATGGTTTAATTTCACCGATGAATGGTGTTGGTCCGGATGATATCAATCTAAAAAGTTTAATTACTCGTTTAATGGACG
GTAAAGTGACTGAAGTTATCATAGCGACCAATGCCACAGCTGATGGCGAAGCAACATCTATGTATATCTCACGGGTCTTG
AAACCAGCAGGAATCAAAGTTACCCGCTTAGCAAGAGGGCTCGCAGTGGGGTCAGATATTGAATACGCAGATGAAGTCAC
CTTGTTAAGAGCTATTGAAAACCGCACAGAACTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.769

98.485

0.5

Multiple sequence alignment