Detailed information NTG0449097

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: ST4021_RS09585
• Genome accession: NZ_CP065493
• Coordinates: 1847894..1848994 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain 4021
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1842894..1853994

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST4021_RS09560 (ST4021_09635)	pgsA	1843436..1843978 (-)	543	WP_011681759.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
ST4021_RS09565 (ST4021_09640)	-	1843991..1844848 (-)	858	WP_011681760.1	helix-turn-helix domain-containing protein	-
ST4021_RS09570 (ST4021_09645)	-	1844907..1846184 (-)	1278	WP_011681761.1	pitrilysin family protein	-
ST4021_RS09575 (ST4021_09650)	-	1846186..1847436 (-)	1251	WP_011681762.1	pitrilysin family protein	-
ST4021_RS09580 (ST4021_09655)	yaaA	1847514..1847891 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
ST4021_RS09585 (ST4021_09660)	recF	1847894..1848994 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
ST4021_RS09590 (ST4021_09665)	guaB	1849163..1850644 (-)	1482	WP_011227627.1	IMP dehydrogenase	-
ST4021_RS09595 (ST4021_09670)	trpS	1850821..1851843 (-)	1023	WP_011681763.1	tryptophan--tRNA ligase	-
ST4021_RS09600 (ST4021_09675)	-	1852271..1853143 (+)	873	WP_011681764.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=449097 ST4021_RS09585 WP_002947786.1 1847894..1848994(+) (recF) [Streptococcus thermophilus strain 4021]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=449097 ST4021_RS09585 WP_002947786.1 1847894..1848994(+) (recF) [Streptococcus thermophilus strain 4021]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432