Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HP062_RS16160 Genome accession   NZ_CP053929
Coordinates   3531643..3533010 (-) Length   455 a.a.
NCBI ID   WP_010467488.1    Uniprot ID   A0A024EEL0
Organism   Pseudomonas sp. B14-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3526643..3538010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP062_RS16135 (HP062_16135) - 3526794..3527477 (+) 684 WP_083375717.1 GntR family transcriptional regulator -
  HP062_RS16140 (HP062_16140) yjiA 3527577..3528545 (-) 969 WP_083375716.1 GTPase -
  HP062_RS16145 (HP062_16145) - 3528708..3528905 (-) 198 WP_010467494.1 YbdD/YjiX family protein -
  HP062_RS16150 (HP062_16150) - 3528920..3530986 (-) 2067 WP_154501788.1 carbon starvation CstA family protein -
  HP062_RS16155 (HP062_16155) - 3531146..3531514 (+) 369 WP_172791666.1 PilZ domain-containing protein -
  HP062_RS16160 (HP062_16160) radA 3531643..3533010 (-) 1368 WP_010467488.1 DNA repair protein RadA Machinery gene
  HP062_RS16165 (HP062_16165) - 3533056..3533598 (-) 543 WP_154913053.1 ankyrin repeat domain-containing protein -
  HP062_RS16170 (HP062_16170) katB 3533659..3535200 (-) 1542 WP_172791667.1 catalase KatB -
  HP062_RS16175 (HP062_16175) mscL 3535486..3535899 (+) 414 WP_010467482.1 large-conductance mechanosensitive channel protein MscL -
  HP062_RS16180 (HP062_16180) - 3535947..3536723 (-) 777 WP_172791668.1 ferredoxin--NADP reductase -
  HP062_RS16185 (HP062_16185) - 3537070..3537780 (+) 711 WP_077749409.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48744.25 Da        Isoelectric Point: 6.8987

>NTDB_id=449076 HP062_RS16160 WP_010467488.1 3531643..3533010(-) (radA) [Pseudomonas sp. B14-6]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKVMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=449076 HP062_RS16160 WP_010467488.1 3531643..3533010(-) (radA) [Pseudomonas sp. B14-6]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCAACCTTCCCCAAGTGGGCCGGCCAGTGCGGCGAGTG
CGGGGCCTGGAACACGCTGACCGAAACCATGGTCGAGAGCGGCGGCGCCGCAGCACCCAGCGGTCGCACCGGTTGGACCG
GCCAGCAGGCTCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATTCCGCGCTTCTCCACCGCGTCCAGTGAACTC
GATCGGGTGTTGGGCGGTGGCCTGGTGGATGGTTCGGTGGTGCTGATCGGCGGTGATCCGGGCATCGGCAAGTCGACCAT
TCTCCTGCAAACCTTGTGCAACCTCGCCAAAGTCATGCCGGCGCTGTACGTCACCGGTGAAGAATCCCAGCAGCAGGTGG
CCATGCGCGCCCGACGTCTGGGCCTGCCGCAGGATCAGCTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATTGCC
ACCGCCCGGGTCGAAAAGCCCAAGGTCATGGTGATCGACTCCATTCAGACCATCTTCACCGAACAACTGCAATCGGCACC
GGGCGGCGTGTCGCAGGTGAGGGAAAGTGCCGCGTTGCTGGTGCGGTATGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TCGGCCACGTGACAAAAGAAGGCGCCTTGGCCGGGCCGCGCGTGCTGGAGCACATGGTCGATACGGTGCTGTATTTCGAA
GGCGAATCCGATGGACGGCTGCGTCTGTTGCGCGCGGTGAAAAACCGTTTCGGCGCTGTCAACGAGTTGGGCGTTTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCGTCAGCGATTTTTCTCACTCGTGCGCAGGAAGAAGTGCCGGGCA
GCGTGGTCATGGCGACGTGGGAAGGAACGCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATTTGGCG
AACCCGCGCCGGGTCACGCTGGGGCTGGATCAGAATCGTCTGGCGATGTTGCTGGCGGTACTGCATCGTCACGGCGGAAT
TCCGACCCACGATCAGGACGTCTTCCTCAACGTGGTCGGTGGGGTGAAGGTGCTGGAAACGGCGTCCGACCTGGCGCTGA
TGGCGGCGGTCATGTCCAGTTTGCGCAACCGCCCGCTGCCCCATGATTTGCTGGTGTTCGGTGAAGTCGGGCTGTCAGGC
GAAGTGCGCCCGGTGCCGAGTGGCCAGGAACGCTTGAAGGAAGCCGCCAAGCACGGCTTCAAACGCGCCATCGTGCCCAA
GGGCAATGCGCCCAAGGAAGCGCCGCCGGGGTTGCAGATTATTGCCGTGACCCGTCTGGAGCAGGCCCTCGACGCATTGT
TCGAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024EEL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468