Detailed information NTG0448989

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HQN50_RS24900
• Genome accession: NZ_CP053922
• Coordinates: 5306192..5307064 (+)
• Length: 290 a.a.
• NCBI ID: WP_003107301.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain YD001
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5301192..5312064

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQN50_RS24885	-	5302575..5303039 (-)	465	WP_003107295.1	pilin	-
HQN50_RS24890	pilB	5303270..5304970 (+)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HQN50_RS24895	pilC	5304974..5306191 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
HQN50_RS24900	pilD	5306192..5307064 (+)	873	WP_003107301.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
HQN50_RS24905	coaE	5307061..5307672 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
HQN50_RS24910	yacG	5307669..5307869 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
HQN50_RS24915	-	5307906..5308115 (-)	210	WP_020750398.1	hypothetical protein	-
HQN50_RS24920	-	5308221..5308910 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
HQN50_RS24925	-	5308907..5309377 (-)	471	WP_003094664.1	hypothetical protein	-
HQN50_RS24930	-	5309374..5309799 (-)	426	WP_003116252.1	GNAT family N-acetyltransferase	-
HQN50_RS24935	-	5309932..5310561 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
HQN50_RS24940	-	5310558..5311007 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
HQN50_RS24945	-	5311033..5311203 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31873.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=448989 HQN50_RS24900 WP_003107301.1 5306192..5307064(+) (pilD) [Pseudomonas aeruginosa strain YD001]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=448989 HQN50_RS24900 WP_003107301.1 5306192..5307064(+) (pilD) [Pseudomonas aeruginosa strain YD001]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469