Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HQM26_RS14960 Genome accession   NZ_CP053920
Coordinates   3211365..3212966 (-) Length   533 a.a.
NCBI ID   WP_054073670.1    Uniprot ID   -
Organism   Comamonas thiooxydans strain QYY     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3206365..3217966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQM26_RS14935 - 3206536..3207027 (-) 492 WP_003068209.1 putative toxin-antitoxin system toxin component, PIN family -
  HQM26_RS14940 - 3207024..3208322 (-) 1299 WP_054073672.1 class I SAM-dependent RNA methyltransferase -
  HQM26_RS14945 - 3208502..3208840 (+) 339 WP_039050220.1 tRNA-binding protein -
  HQM26_RS14950 - 3208898..3210130 (+) 1233 WP_054073671.1 DUF711 family protein -
  HQM26_RS14955 - 3210266..3211189 (+) 924 WP_003068201.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  HQM26_RS14960 rpoN/rpoN1 3211365..3212966 (-) 1602 WP_054073670.1 RNA polymerase factor sigma-54 Machinery gene
  HQM26_RS14965 lptB 3213112..3213894 (-) 783 WP_012840179.1 LPS export ABC transporter ATP-binding protein -
  HQM26_RS14970 lptA 3213891..3214547 (-) 657 WP_003068194.1 lipopolysaccharide transport periplasmic protein LptA -
  HQM26_RS14975 - 3214678..3215328 (-) 651 WP_003068192.1 thiol:disulfide interchange protein DsbA/DsbL -
  HQM26_RS14980 - 3215489..3216187 (-) 699 WP_054073669.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 533 a.a.        Molecular weight: 59136.40 Da        Isoelectric Point: 4.6610

>NTDB_id=448953 HQM26_RS14960 WP_054073670.1 3211365..3212966(-) (rpoN/rpoN1) [Comamonas thiooxydans strain QYY]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLVDNPFLERAGDEAETAGDAPVDVAASASEYSTSDGIHAE
RDASQAQQATETVAETSNPETPETLNWEADGMDGQDGEWGGESSSEWDTPSASSSTRNRDGDDETDAIDLAREHQSLTDF
LHRQALSLHLGAADMAALRFLIESLSDDGYLEDSLQELAQSLAGDDLEEREELEQHFAIALKLLQSLEPVGVGARDLAEC
LQLQLRDLIRTAEDEGTTEAHMSRLLLAQAICAQPMDLLARRDLRKLTSLCGAREEQLREAMALIARLEPRPGRRFVDVE
RHIVVPDVIVRPLRSGSGRVDFSVQLNPEVMPRLRVHDIYASVLRRHKNSDGHAALQQQLQEARWFIKNIQQRFDTILRV
SEAIVERQKNFFVHGELAMRPLVLRDIADTLGLHESTISRVTTAKYMATPQGTFELKYFFGSGLGTETGGSASSTAVRAL
IKQFVDAEDARKPLSDAKLADMLKEQGIECARRTVAKYREQLKIPTTTLRKAL

Nucleotide


Download         Length: 1602 bp        

>NTDB_id=448953 HQM26_RS14960 WP_054073670.1 3211365..3212966(-) (rpoN/rpoN1) [Comamonas thiooxydans strain QYY]
ATGAAGCCAGGTCTCTCGCTACGCGTTTCGCAGCATTTATCGCTTACGCCGCAGCTGCAGCAATCCATTCAGCTGCTGCA
GCTCTCCACCCTGGAGCTGGCGCAGGAAGTCGAGCAGATGCTGGTCGACAACCCTTTTCTGGAACGTGCGGGCGATGAGG
CAGAAACTGCGGGGGATGCTCCTGTAGATGTAGCTGCTAGCGCCAGTGAATACAGCACTTCAGATGGTATTCATGCTGAA
AGAGATGCATCGCAAGCGCAACAAGCTACTGAAACGGTAGCGGAGACATCAAACCCCGAAACCCCGGAAACGCTGAACTG
GGAGGCCGACGGCATGGACGGCCAGGACGGGGAATGGGGCGGCGAATCCAGCAGCGAGTGGGATACGCCCTCGGCCAGCA
GCTCCACGCGCAACCGCGACGGCGATGACGAAACCGATGCCATCGATCTGGCGCGCGAGCACCAGAGCCTGACCGACTTT
CTGCACCGTCAGGCGCTGAGCCTGCATCTGGGCGCGGCGGACATGGCGGCACTGCGCTTTCTCATCGAGTCGCTCAGCGA
CGACGGCTATCTCGAGGATTCCCTGCAGGAGCTGGCGCAGAGCCTGGCCGGCGACGACCTGGAAGAGCGCGAGGAGCTGG
AGCAGCACTTTGCCATTGCGCTGAAGCTGCTGCAAAGCCTGGAGCCCGTGGGCGTGGGCGCGCGCGATCTGGCCGAGTGC
CTGCAGCTGCAGCTGCGCGATCTGATCCGCACGGCCGAGGACGAGGGCACGACCGAGGCGCATATGAGCCGGCTGCTGCT
GGCGCAGGCCATCTGTGCCCAGCCCATGGACCTGCTGGCGCGGCGCGATCTGCGCAAGCTCACCAGCCTGTGCGGCGCGC
GCGAGGAACAGCTGCGCGAGGCCATGGCCCTGATCGCCAGGCTGGAGCCGCGTCCGGGGCGCCGCTTTGTCGACGTGGAA
CGCCATATCGTGGTGCCCGATGTCATCGTGCGCCCGCTGCGCTCCGGCTCGGGCCGGGTGGACTTCTCCGTGCAGCTCAA
CCCCGAGGTCATGCCGCGTCTGCGCGTGCACGACATCTATGCCAGCGTGCTGCGCCGCCACAAGAACAGCGACGGCCATG
CGGCGCTGCAGCAGCAGTTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCTTGCGGGTC
TCCGAAGCCATCGTGGAGCGGCAGAAGAACTTCTTTGTGCATGGCGAGCTGGCCATGCGCCCGCTGGTGCTGCGCGATAT
CGCCGACACGCTGGGCCTGCACGAGTCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCACGCCCCAGGGCACTT
TCGAGCTCAAGTATTTCTTCGGCTCGGGCCTGGGCACGGAAACCGGCGGCAGTGCTTCCAGCACGGCCGTGCGTGCGCTG
ATCAAGCAGTTTGTCGATGCCGAAGATGCCAGAAAGCCGCTGTCGGACGCCAAGCTGGCCGATATGCTCAAGGAGCAGGG
CATCGAGTGCGCGCGCCGCACCGTTGCCAAATACCGCGAGCAGCTCAAGATACCGACGACCACGCTGCGCAAGGCGCTGT
AG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(150-360)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(375-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.746

100

0.51