Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   STCNRZ1575_RS08905 Genome accession   NZ_CP065490
Coordinates   1707886..1708179 (-) Length   97 a.a.
NCBI ID   WP_082309154.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1575     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1702886..1713179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1575_RS08865 (STCNRZ1575_08825) - 1703288..1703731 (-) 444 WP_011681680.1 hypothetical protein -
  STCNRZ1575_RS08870 - 1703805..1704143 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  STCNRZ1575_RS08875 - 1704187..1704462 (-) 276 WP_011681681.1 hypothetical protein -
  STCNRZ1575_RS08880 (STCNRZ1575_08835) - 1704474..1704671 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  STCNRZ1575_RS08885 (STCNRZ1575_08840) - 1704920..1706113 (-) 1194 WP_014608740.1 acetate kinase -
  STCNRZ1575_RS08890 (STCNRZ1575_08845) comGH 1706169..1707125 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  STCNRZ1575_RS08895 (STCNRZ1575_08850) comGG 1707170..1707487 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG Machinery gene
  STCNRZ1575_RS08900 (STCNRZ1575_08855) comGF 1707465..1707902 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  STCNRZ1575_RS08905 (STCNRZ1575_08860) comGE 1707886..1708179 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE Machinery gene
  STCNRZ1575_RS08910 (STCNRZ1575_08865) comGD 1708151..1708579 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD Machinery gene
  STCNRZ1575_RS08915 (STCNRZ1575_08870) comGC 1708539..1708865 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STCNRZ1575_RS08920 (STCNRZ1575_08875) comGB 1708862..1709962 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  STCNRZ1575_RS08925 (STCNRZ1575_08880) comGA 1709844..1710785 (-) 942 WP_084829888.1 competence type IV pilus ATPase ComGA Machinery gene
  STCNRZ1575_RS08930 (STCNRZ1575_08885) - 1710866..1711228 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10860.74 Da        Isoelectric Point: 10.4561

>NTDB_id=448779 STCNRZ1575_RS08905 WP_082309154.1 1707886..1708179(-) (comGE) [Streptococcus thermophilus strain CNRZ1575]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMSDNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=448779 STCNRZ1575_RS08905 WP_082309154.1 1707886..1708179(-) (comGE) [Streptococcus thermophilus strain CNRZ1575]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGTCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGTCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

42.268

100

0.423
  comGE Streptococcus mutans UA159

42.268

100

0.423