Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   STCNRZ1575_RS08355 Genome accession   NZ_CP065490
Coordinates   1610633..1613458 (-) Length   941 a.a.
NCBI ID   WP_232992605.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1575     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1605633..1618458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1575_RS08310 (STCNRZ1575_08280) efp 1605911..1606471 (-) 561 WP_011227545.1 elongation factor P -
  STCNRZ1575_RS08315 (STCNRZ1575_08285) - 1606584..1607039 (-) 456 WP_002951893.1 deaminase -
  STCNRZ1575_RS08320 (STCNRZ1575_08290) - 1607058..1608119 (-) 1062 WP_011681620.1 Xaa-Pro peptidase family protein -
  STCNRZ1575_RS08325 (STCNRZ1575_08295) - 1608307..1608735 (-) 429 WP_095559450.1 hypothetical protein -
  STCNRZ1575_RS08330 (STCNRZ1575_08300) - 1608732..1609187 (-) 456 WP_232505727.1 ABC transporter ATP-binding protein -
  STCNRZ1575_RS08335 - 1609343..1609417 (-) 75 WP_236682066.1 hypothetical protein -
  STCNRZ1575_RS08340 - 1609539..1609706 (-) 168 WP_250644923.1 ATP-binding cassette domain-containing protein -
  STCNRZ1575_RS08345 (STCNRZ1575_08310) - 1609915..1610067 (-) 153 WP_173405400.1 hypothetical protein -
  STCNRZ1575_RS08350 (STCNRZ1575_08315) - 1610267..1610539 (-) 273 WP_002946573.1 DUF3923 family protein -
  STCNRZ1575_RS08355 (STCNRZ1575_08320) uvrA 1610633..1613458 (-) 2826 WP_232992605.1 excinuclease ABC subunit UvrA Machinery gene
  STCNRZ1575_RS08360 (STCNRZ1575_08325) - 1613766..1614710 (+) 945 WP_002951901.1 magnesium transporter CorA family protein -
  STCNRZ1575_RS08365 (STCNRZ1575_08330) - 1614781..1615452 (+) 672 WP_064356092.1 DUF1129 domain-containing protein -
  STCNRZ1575_RS08370 (STCNRZ1575_08335) - 1615569..1616450 (+) 882 WP_064356095.1 DUF4300 family protein -
  STCNRZ1575_RS08375 (STCNRZ1575_08340) rpsR 1616576..1616815 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  STCNRZ1575_RS08380 (STCNRZ1575_08345) ssb 1616857..1617375 (-) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  STCNRZ1575_RS08385 (STCNRZ1575_08350) rpsF 1617387..1617677 (-) 291 WP_002951906.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103931.08 Da        Isoelectric Point: 5.9728

>NTDB_id=448769 STCNRZ1575_RS08355 WP_232992605.1 1610633..1613458(-) (uvrA) [Streptococcus thermophilus strain CNRZ1575]
MQDKLVIRGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGNMEKPDVDSIDGL
SPAISIDQKTTSNNPRSTVGTVTEINDYLRLLYARVGVPYCINGHGAIKSSSVEQIVDEVLALPERTRMQILAPIVRRRK
GQHKAIFERVQKDGYVRVRVDGEIYDVTEVPELSKSKMHNIEVVVDRLVNKEGIRSRLFDSVEAALRLADGYLIVDTMDD
NELLYSEHYSCPVCGFTVPELEPRLFSFNAPFGSCPTCDGLGNKLEVDIDLVIPDPSKTLREGALAPWNPISSNYYPAML
EQAMEQFGVDMDTPFENLKKEEQDLILYGSGDREFHFHYVNDFGRVRDIDIPFEGVVTNINRRYHETNSDFTRNVMRGYM
NELSCPTCHGYRLNEAALSVRVGGEDGLNIGQISELSISDHLQEIDRLELGENEELIARPIIKEIKDRLTFLNNVGLNYL
TLSRMAGTLSGGESQRIRLATQIGSNLSGVLYVLDEPSIGLHQRDNDRLISSLKKMRDLGNTLIVVEHDEDTMREADWLI
DVGPGAGAFGGQIIASGTPEAVARNKKSITGQYLSGAKSIPVPTERRVGNGCFIEVKGASENNLKNVSVKFPLGKLIAVT
GVSGSGKSTLVNSILKKKIAQELNRNSEKPGKHKSVTGIENIERLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGTRYNSETLEVRYKGKNIAEILDMTVDDAVDFF
AAIPKIARKVQTIKDVGLGYVTLGQSATTLSGGEAQRMKLASELHKRSTGKSFYILDEPTTGLHTDDIARLLKVLQRFVD
DGNTVLVIEHNLDVIKTADHIIDLGPEGGVGGGTIVATGTPEEVVAVPKSYTGQYLKEKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=448769 STCNRZ1575_RS08355 WP_232992605.1 1610633..1613458(-) (uvrA) [Streptococcus thermophilus strain CNRZ1575]
ATGCAAGATAAGTTAGTGATTCGCGGAGCAAGAGCTCACAATTTAAAAAATATTGATGTAGAGATTCCTCGTGACAAGCT
CGTCGTCGTGACGGGGTTGTCGGGGTCTGGTAAGTCTTCTTTGGCTTTTGATACAATTTATGCAGAGGGTCAGCGCCGTT
ATGTTGAAAGTCTCTCAGCTTATGCCCGCCAATTCTTGGGAAATATGGAGAAACCTGATGTGGACTCGATTGATGGCTTG
AGTCCCGCCATCTCCATTGATCAGAAAACAACGAGTAATAACCCTCGTTCGACTGTGGGAACTGTAACGGAGATTAATGA
CTATCTTCGTCTCCTTTATGCGCGTGTGGGTGTGCCTTATTGTATCAATGGGCATGGGGCCATTAAGTCGTCATCAGTGG
AACAGATTGTAGATGAGGTTTTAGCCCTTCCTGAACGGACACGTATGCAGATTTTAGCGCCGATTGTCCGTCGTCGAAAG
GGGCAACACAAGGCGATTTTTGAGCGCGTGCAGAAGGACGGTTATGTTCGTGTTCGTGTGGATGGTGAGATATACGATGT
GACGGAAGTCCCTGAGCTATCCAAGTCGAAGATGCATAATATTGAGGTGGTTGTGGACCGTTTGGTTAATAAGGAAGGTA
TCCGTAGTCGTCTCTTTGACTCAGTCGAGGCAGCGCTACGTTTAGCGGATGGCTACTTGATTGTGGATACTATGGATGAT
AATGAATTGCTCTACTCGGAGCATTATTCTTGTCCAGTTTGTGGTTTTACAGTGCCTGAGTTGGAGCCGCGTCTCTTTTC
CTTCAATGCGCCATTTGGTTCTTGTCCGACCTGTGACGGTTTAGGAAATAAACTAGAAGTTGATATTGATTTGGTCATTC
CTGACCCTAGTAAGACCTTGCGTGAAGGTGCACTAGCGCCTTGGAATCCTATCTCATCCAACTACTATCCTGCCATGCTT
GAGCAGGCCATGGAACAGTTTGGCGTGGATATGGATACGCCATTTGAAAATCTTAAAAAAGAAGAACAAGATTTGATTCT
CTACGGATCTGGTGACCGCGAGTTCCATTTCCATTATGTTAATGATTTTGGTAGGGTGCGTGATATTGACATTCCTTTTG
AAGGGGTTGTGACTAATATCAATCGACGCTATCATGAGACTAACAGTGATTTCACCCGCAATGTCATGCGTGGTTATATG
AATGAACTGTCATGTCCAACTTGTCATGGCTATCGTCTTAACGAAGCAGCACTCTCGGTTCGTGTTGGTGGTGAGGATGG
CTTAAATATTGGTCAAATTTCTGAGCTGTCTATTTCTGATCATCTTCAAGAAATAGATCGCCTTGAATTAGGTGAGAATG
AAGAATTGATTGCCCGTCCAATTATCAAGGAAATCAAGGATCGTCTGACTTTCTTAAACAATGTCGGCCTTAATTACTTG
ACTCTCTCTCGTATGGCCGGAACACTTTCAGGTGGTGAGAGTCAGCGTATCCGTTTGGCGACACAGATTGGCTCCAACCT
TTCTGGAGTCCTTTATGTTTTGGATGAGCCCTCTATAGGGCTTCATCAGCGTGATAATGATCGCTTGATTTCAAGTCTTA
AAAAGATGCGTGATTTGGGCAATACCTTAATTGTGGTGGAGCATGATGAAGATACCATGCGTGAAGCTGACTGGCTTATT
GATGTAGGACCTGGCGCCGGTGCCTTTGGTGGACAAATCATAGCTTCAGGAACCCCAGAAGCAGTTGCTAGAAATAAGAA
ATCAATTACTGGTCAGTACCTGTCAGGTGCTAAATCAATTCCTGTACCGACGGAACGCCGTGTAGGAAACGGCTGTTTTA
TCGAGGTTAAAGGAGCCAGTGAAAATAATCTTAAAAATGTGTCTGTCAAGTTCCCACTTGGAAAATTAATTGCAGTGACA
GGCGTTTCTGGTTCTGGAAAGTCAACTTTGGTTAACAGTATTCTCAAGAAAAAGATTGCCCAAGAGCTTAATCGAAACAG
TGAGAAACCTGGGAAACATAAATCGGTGACTGGAATCGAGAATATCGAGCGTTTGATTGATATTGATCAAAGTCCAATCG
GGCGTACTCCACGTTCCAACCCTGCAACCTACACAGGCGTCTTCGACGATATTCGCGATCTTTTTGCTCAAACCAACGAG
GCCAAGATTCGCGGTTATAAGAAGGGACGTTTCTCTTTCAATGTCAAAGGTGGCCGTTGTGAAGCCTGCTCTGGTGATGG
GATTATCAAGATTGAGATGCACTTCTTGCCTGATGTTTATGTACCTTGTGAGGTTTGCCATGGCACACGCTATAATTCTG
AGACCTTAGAAGTTCGTTATAAAGGGAAGAATATTGCTGAAATTCTGGATATGACAGTTGATGACGCGGTTGATTTCTTT
GCGGCTATCCCTAAGATTGCTCGTAAGGTGCAGACAATCAAGGATGTGGGGCTCGGGTATGTGACTTTGGGGCAATCAGC
AACAACCCTATCAGGTGGTGAGGCACAGCGTATGAAACTGGCTAGTGAACTTCACAAACGCTCTACTGGGAAGTCTTTCT
ACATTCTCGATGAGCCTACGACTGGTCTCCATACAGATGACATTGCTCGTCTCTTGAAGGTGCTTCAGCGTTTTGTGGAC
GATGGTAACACGGTTCTCGTGATTGAGCACAATCTGGATGTTATTAAGACAGCAGACCATATCATTGATTTGGGTCCTGA
AGGTGGTGTTGGTGGAGGTACTATCGTAGCTACAGGGACTCCAGAAGAGGTAGTAGCCGTTCCCAAAAGCTATACAGGAC
AATATTTGAAAGAAAAATTGAAATAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-239)

ABC transporter (ABC_tran)

(624-860)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

84.894

99.894

0.848
  uvrA Streptococcus pneumoniae TIGR4

84.894

99.894

0.848
  uvrA Streptococcus pneumoniae D39

84.894

99.894

0.848