Detailed information NTG0448648

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: STCNRZ302_RS06870
• Genome accession: NZ_CP065489
• Coordinates: 1324939..1325865 (-)
• Length: 308 a.a.
• NCBI ID: WP_002946409.1
• Uniprot ID: Q5M3H5
• Organism: Streptococcus thermophilus strain CNRZ302
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1319939..1330865

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STCNRZ302_RS06840 (STCNRZ302_06765)	-	1320017..1320811 (-)	795	WP_011681412.1	HAD family hydrolase	-
STCNRZ302_RS06845 (STCNRZ302_06770)	-	1320995..1321372 (+)	378	WP_011681413.1	GntR family transcriptional regulator	-
STCNRZ302_RS06850 (STCNRZ302_06775)	-	1321377..1322075 (+)	699	WP_014608540.1	ABC transporter ATP-binding protein	-
STCNRZ302_RS06855 (STCNRZ302_06780)	-	1322087..1322872 (+)	786	WP_002951425.1	hypothetical protein	-
STCNRZ302_RS06860 (STCNRZ302_06785)	-	1322922..1323851 (-)	930	WP_011681415.1	ATP-binding cassette domain-containing protein	-
STCNRZ302_RS06865 (STCNRZ302_06790)	amiE	1323844..1324929 (-)	1086	WP_011226304.1	ABC transporter ATP-binding protein	Regulator
STCNRZ302_RS06870 (STCNRZ302_06795)	amiD	1324939..1325865 (-)	927	WP_002946409.1	oligopeptide ABC transporter permease OppC	Regulator
STCNRZ302_RS06875 (STCNRZ302_06800)	amiC	1325865..1327358 (-)	1494	WP_179970628.1	ABC transporter permease	Regulator
STCNRZ302_RS06880 (STCNRZ302_06805)	amiA3	1327419..1329386 (-)	1968	WP_179970627.1	peptide ABC transporter substrate-binding protein	Regulator
STCNRZ302_RS06885 (STCNRZ302_06810)	-	1329692..1330839 (+)	1148	WP_095559415.1	IS3 family transposase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34694.85 Da
• Isoelectric Point: 9.7054

>NTDB_id=448648 STCNRZ302_RS06870 WP_002946409.1 1324939..1325865(-) (amiD) [Streptococcus thermophilus strain CNRZ302]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=448648 STCNRZ302_RS06870 WP_002946409.1 1324939..1325865(-) (amiD) [Streptococcus thermophilus strain CNRZ302]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

3D structure

• AlphaFold DB: Q5M3H5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	100	100	1
amiD	Streptococcus thermophilus LMD-9	100	100	1
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964