Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   STCNRZ302_RS06875 Genome accession   NZ_CP065489
Coordinates   1325865..1327358 (-) Length   497 a.a.
NCBI ID   WP_179970628.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ302     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1320865..1332358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ302_RS06845 (STCNRZ302_06770) - 1320995..1321372 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  STCNRZ302_RS06850 (STCNRZ302_06775) - 1321377..1322075 (+) 699 WP_014608540.1 ABC transporter ATP-binding protein -
  STCNRZ302_RS06855 (STCNRZ302_06780) - 1322087..1322872 (+) 786 WP_002951425.1 hypothetical protein -
  STCNRZ302_RS06860 (STCNRZ302_06785) - 1322922..1323851 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein -
  STCNRZ302_RS06865 (STCNRZ302_06790) amiE 1323844..1324929 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STCNRZ302_RS06870 (STCNRZ302_06795) amiD 1324939..1325865 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  STCNRZ302_RS06875 (STCNRZ302_06800) amiC 1325865..1327358 (-) 1494 WP_179970628.1 ABC transporter permease Regulator
  STCNRZ302_RS06880 (STCNRZ302_06805) amiA3 1327419..1329386 (-) 1968 WP_179970627.1 peptide ABC transporter substrate-binding protein Regulator
  STCNRZ302_RS06885 (STCNRZ302_06810) - 1329692..1330839 (+) 1148 WP_095559415.1 IS3 family transposase -
  STCNRZ302_RS06890 (STCNRZ302_06815) - 1330877..1331061 (-) 185 Protein_1303 IS3 family transposase -
  STCNRZ302_RS06895 - 1331055..1331456 (-) 402 Protein_1304 ABC transporter ATP-binding protein -
  STCNRZ302_RS06900 (STCNRZ302_06830) - 1331451..1331811 (-) 361 Protein_1305 TatD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55818.68 Da        Isoelectric Point: 10.0158

>NTDB_id=448649 STCNRZ302_RS06875 WP_179970628.1 1325865..1327358(-) (amiC) [Streptococcus thermophilus strain CNRZ302]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKINYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=448649 STCNRZ302_RS06875 WP_179970628.1 1325865..1327358(-) (amiC) [Streptococcus thermophilus strain CNRZ302]
ATGAAAAGATATATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCGAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
TAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCGGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACACTCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGACTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

97.787

100

0.978
  amiC Streptococcus thermophilus LMD-9

97.384

100

0.974
  amiC Streptococcus salivarius strain HSISS4

96.378

100

0.964