Detailed information NTG0448583

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: STAVA1121_RS09605
• Genome accession: NZ_CP065488
• Coordinates: 1816034..1817134 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain AVA1121
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1811034..1822134

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STAVA1121_RS09580 (STAVA1121_09455)	pgsA	1811577..1812118 (-)	542	Protein_1828	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
STAVA1121_RS09585 (STAVA1121_09460)	-	1812131..1812988 (-)	858	WP_347131288.1	helix-turn-helix domain-containing protein	-
STAVA1121_RS09590 (STAVA1121_09465)	-	1813047..1814324 (-)	1278	WP_347131290.1	pitrilysin family protein	-
STAVA1121_RS09595 (STAVA1121_09470)	-	1814326..1815576 (-)	1251	WP_180477205.1	pitrilysin family protein	-
STAVA1121_RS09600 (STAVA1121_09475)	yaaA	1815654..1816031 (+)	378	WP_347131291.1	S4 domain-containing protein YaaA	-
STAVA1121_RS09605 (STAVA1121_09480)	recF	1816034..1817134 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
STAVA1121_RS09610 (STAVA1121_09485)	guaB	1817303..1818784 (-)	1482	WP_011227627.1	IMP dehydrogenase	-
STAVA1121_RS09615 (STAVA1121_09490)	trpS	1818961..1819983 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
STAVA1121_RS09620 (STAVA1121_09495)	-	1820411..1821283 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=448583 STAVA1121_RS09605 WP_002947786.1 1816034..1817134(+) (recF) [Streptococcus thermophilus strain AVA1121]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=448583 STAVA1121_RS09605 WP_002947786.1 1816034..1817134(+) (recF) [Streptococcus thermophilus strain AVA1121]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432