Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   STAVA1121_RS06360 Genome accession   NZ_CP065488
Coordinates   1187231..1187434 (-) Length   67 a.a.
NCBI ID   WP_224103626.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA1121     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1182231..1192434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS06325 (STAVA1121_06240) - 1182330..1183424 (-) 1095 WP_014608473.1 sensor histidine kinase -
  STAVA1121_RS06330 (STAVA1121_06245) - 1183417..1184154 (-) 738 WP_011227347.1 ABC transporter permease -
  STAVA1121_RS06335 (STAVA1121_06250) - 1184151..1185032 (-) 882 WP_232974169.1 ABC transporter ATP-binding protein -
  STAVA1121_RS06340 (STAVA1121_06255) - 1185025..1185204 (-) 180 WP_232974170.1 hypothetical protein -
  STAVA1121_RS06345 (STAVA1121_06260) - 1185215..1185424 (-) 210 WP_011227348.1 hypothetical protein -
  STAVA1121_RS06350 (STAVA1121_06265) - 1185576..1186513 (-) 938 Protein_1196 bile acid:sodium symporter family protein -
  STAVA1121_RS06355 (STAVA1121_06270) - 1186658..1187107 (-) 450 WP_232974274.1 cytidine deaminase -
  STAVA1121_RS06360 comA/nlmT 1187231..1187434 (-) 204 WP_224103626.1 ABC transporter ATP-binding protein Regulator
  STAVA1121_RS06365 - 1187913..1188443 (+) 531 WP_224103625.1 hypothetical protein -
  STAVA1121_RS06370 (STAVA1121_06285) - 1188447..1189007 (+) 561 WP_173940410.1 hypothetical protein -
  STAVA1121_RS06375 (STAVA1121_06290) - 1189640..1190086 (-) 447 WP_173940411.1 GNAT family N-acetyltransferase -
  STAVA1121_RS06380 (STAVA1121_06295) - 1190101..1190829 (-) 729 Protein_1202 helicase-related protein -
  STAVA1121_RS06385 (STAVA1121_06300) - 1190924..1191364 (-) 441 WP_176243261.1 ASCH domain-containing protein -
  STAVA1121_RS06390 - 1191376..1191621 (-) 246 WP_347131125.1 hypothetical protein -

Sequence

Protein


Download         Length: 67 a.a.        Molecular weight: 7756.99 Da        Isoelectric Point: 4.1469

>NTDB_id=448538 STAVA1121_RS06360 WP_224103626.1 1187231..1187434(-) (comA/nlmT) [Streptococcus thermophilus strain AVA1121]
MARALLMKTDILFLDEFSSGIDLETLSKIENRLLQTSKLIIYITHVDTDRIIQQFDEIIDLNGFVDL

Nucleotide


Download         Length: 204 bp        

>NTDB_id=448538 STAVA1121_RS06360 WP_224103626.1 1187231..1187434(-) (comA/nlmT) [Streptococcus thermophilus strain AVA1121]
TTGGCAAGAGCCTTATTGATGAAGACGGATATCTTATTTTTAGACGAATTTTCTTCTGGTATTGACCTTGAAACGTTATC
AAAAATAGAGAATCGACTTTTACAAACGAGTAAATTAATTATTTACATCACACATGTAGACACCGATAGAATTATCCAAC
AATTTGATGAAATAATAGATTTGAATGGGTTTGTAGACTTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

45

89.552

0.403
  comA Streptococcus gordonii str. Challis substr. CH1

32.911

100

0.388