Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   STT19_RS09560 Genome accession   NZ_CP065487
Coordinates   1849587..1850687 (+) Length   366 a.a.
NCBI ID   WP_002947786.1    Uniprot ID   Q5LXI7
Organism   Streptococcus thermophilus strain ST19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1844587..1855687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT19_RS09535 (STT19_09605) pgsA 1845125..1845667 (-) 543 WP_002947777.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  STT19_RS09540 (STT19_09610) - 1845680..1846537 (-) 858 WP_023910023.1 helix-turn-helix domain-containing protein -
  STT19_RS09545 (STT19_09615) - 1846596..1847877 (-) 1282 Protein_1822 pitrilysin family protein -
  STT19_RS09550 (STT19_09620) - 1847879..1849129 (-) 1251 WP_023910024.1 pitrilysin family protein -
  STT19_RS09555 (STT19_09625) yaaA 1849207..1849584 (+) 378 WP_002947785.1 S4 domain-containing protein YaaA -
  STT19_RS09560 (STT19_09630) recF 1849587..1850687 (+) 1101 WP_002947786.1 DNA replication/repair protein RecF Machinery gene
  STT19_RS09565 (STT19_09635) guaB 1850856..1852337 (-) 1482 WP_011227627.1 IMP dehydrogenase -
  STT19_RS09570 (STT19_09640) trpS 1852514..1853536 (-) 1023 WP_011681763.1 tryptophan--tRNA ligase -
  STT19_RS09575 (STT19_09645) - 1853964..1854836 (+) 873 WP_064355694.1 YitT family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42173.29 Da        Isoelectric Point: 8.3913

>NTDB_id=448480 STT19_RS09560 WP_002947786.1 1849587..1850687(+) (recF) [Streptococcus thermophilus strain ST19]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=448480 STT19_RS09560 WP_002947786.1 1849587..1850687(+) (recF) [Streptococcus thermophilus strain ST19]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5LXI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.642

97.814

0.642
  recF Bacillus subtilis subsp. subtilis str. 168

42.935

100

0.432