Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   APA07_RS00215 Genome accession   NC_017121
Coordinates   43050..44075 (+) Length   341 a.a.
NCBI ID   WP_220400579.1    Uniprot ID   -
Organism   Acetobacter pasteurianus IFO 3283-07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 38050..49075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APA07_RS00195 (APA07_00400) - 38515..38991 (+) 477 WP_003624914.1 hypothetical protein -
  APA07_RS00200 (APA07_00410) hemA 39052..40359 (+) 1308 WP_012812273.1 5-aminolevulinate synthase -
  APA07_RS00205 (APA07_00420) - 40407..41285 (-) 879 WP_003624910.1 DsbA family protein -
  APA07_RS00210 (APA07_00430) - 41333..42790 (+) 1458 WP_003624908.1 gamma-glutamyltransferase -
  APA07_RS00215 (APA07_00440) recA 43050..44075 (+) 1026 WP_220400579.1 recombinase RecA Machinery gene
  APA07_RS00220 (APA07_00450) - 44082..44594 (-) 513 WP_012812275.1 GNAT family N-acetyltransferase -
  APA07_RS00225 (APA07_00460) - 44664..45029 (+) 366 WP_003624903.1 winged helix-turn-helix domain-containing protein -
  APA07_RS00230 (APA07_00470) - 45096..46640 (+) 1545 WP_012812276.1 glucan biosynthesis protein -
  APA07_RS00235 (APA07_00480) mdoH 46643..48775 (+) 2133 WP_012812277.1 glucans biosynthesis glucosyltransferase MdoH -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36712.06 Da        Isoelectric Point: 6.6205

>NTDB_id=44830 APA07_RS00215 WP_220400579.1 43050..44075(+) (recA) [Acetobacter pasteurianus IFO 3283-07]
MDKAKALEGALGQIERAFGKGSVMRLGQRPKVEADVIPTGSLGLDIALGIGGLPRGRVVEIYGPESSGKTTLALHAIAEA
QKRGGTCAFIDAEHALDPSYAKKLGVDVDNLLISQPDTGEQALEIADTLVRSGAIDVLVVDSVAALVPRAELEGDMGDSH
VGLHARLMSQALRKLTGTVARSNTLMIFLNQIRLKIGVMFGNPETTTGGNALKFYSSVRMDIRRIGSIKDKDEVTGNQTR
VKVVKNKMAPPFRQVEFDIMYGEGISKVGELIDLGVKAGVVEKSGAWFSYDSQRIGQGRENAKQFLRDHPEMAADIERRV
REHAGVVAEAMMVAPEHQEGD

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=44830 APA07_RS00215 WP_220400579.1 43050..44075(+) (recA) [Acetobacter pasteurianus IFO 3283-07]
ATGGATAAGGCAAAGGCTCTCGAAGGCGCGCTGGGGCAGATTGAACGTGCTTTTGGCAAGGGTTCTGTCATGCGCTTGGG
GCAGCGGCCCAAAGTAGAGGCAGATGTTATTCCTACTGGTTCCCTTGGGCTGGATATTGCGCTCGGAATTGGTGGGTTGC
CTCGTGGGCGTGTGGTGGAAATTTACGGGCCAGAAAGCTCTGGTAAAACCACGCTTGCGCTCCATGCTATTGCAGAAGCG
CAAAAACGCGGCGGCACATGTGCTTTTATTGATGCCGAACATGCGCTGGACCCCAGTTATGCCAAAAAGCTGGGTGTGGA
CGTAGATAACCTGCTGATCAGCCAGCCAGATACGGGTGAACAGGCGCTGGAAATTGCAGATACACTTGTGCGATCCGGCG
CGATTGATGTTCTGGTGGTAGATAGTGTTGCCGCATTGGTGCCACGTGCAGAACTGGAAGGGGATATGGGCGATAGCCAT
GTTGGCCTTCATGCACGTTTGATGAGCCAGGCGCTGCGTAAGCTTACGGGCACGGTGGCACGCTCCAATACCCTGATGAT
CTTTCTGAACCAGATCCGCCTGAAAATTGGTGTAATGTTTGGGAACCCGGAAACAACCACGGGTGGTAACGCCCTGAAGT
TCTATTCTTCCGTGCGTATGGATATTCGCCGTATCGGGTCCATTAAGGACAAGGATGAGGTTACTGGTAACCAAACGCGC
GTAAAGGTTGTTAAAAACAAAATGGCGCCACCTTTCCGTCAGGTAGAGTTTGATATCATGTACGGTGAAGGTATCAGCAA
GGTGGGTGAGCTGATTGACCTTGGCGTAAAAGCTGGTGTTGTCGAAAAATCCGGGGCTTGGTTTTCATACGATAGTCAGC
GCATTGGGCAGGGGCGTGAAAACGCCAAACAGTTCCTGCGTGATCATCCAGAAATGGCCGCAGATATCGAACGCCGTGTG
CGTGAACACGCCGGTGTTGTTGCCGAGGCCATGATGGTGGCGCCAGAACACCAAGAAGGTGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

70.122

96.188

0.674
  recA Neisseria gonorrhoeae MS11

69.018

95.601

0.66
  recA Neisseria gonorrhoeae MS11

69.018

95.601

0.66
  recA Neisseria gonorrhoeae strain FA1090

69.018

95.601

0.66
  recA Pseudomonas stutzeri DSM 10701

66.766

97.947

0.654
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.089

99.12

0.645
  recA Vibrio cholerae strain A1552

65.089

99.12

0.645
  recA Glaesserella parasuis strain SC1401

68.652

93.548

0.642
  recA Acinetobacter baylyi ADP1

67.391

94.428

0.636
  recA Bacillus subtilis subsp. subtilis str. 168

66.462

95.308

0.633
  recA Helicobacter pylori 26695

63.717

99.413

0.633
  recA Helicobacter pylori strain NCTC11637

63.422

99.413

0.631
  recA Acinetobacter baumannii D1279779

66.77

94.428

0.63
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.757

100

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

95.894

0.61
  recA Streptococcus pyogenes NZ131

59.078

100

0.601
  recA Latilactobacillus sakei subsp. sakei 23K

62.462

95.308

0.595
  recA Streptococcus mutans UA159

60.843

97.361

0.592
  recA Streptococcus mitis SK321

60.606

96.774

0.587
  recA Streptococcus mitis NCTC 12261

60.303

96.774

0.584
  recA Streptococcus pneumoniae TIGR4

60

96.774

0.581
  recA Streptococcus pneumoniae R6

60

96.774

0.581
  recA Streptococcus pneumoniae Rx1

60

96.774

0.581
  recA Streptococcus pneumoniae D39

60

96.774

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

93.842

0.563
  recA Lactococcus lactis subsp. cremoris KW2

57.831

97.361

0.563

Multiple sequence alignment