Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   CUP3940_RS01355 Genome accession   NZ_CP053849
Coordinates   261820..262464 (+) Length   214 a.a.
NCBI ID   WP_004276792.1    Uniprot ID   A0A5L4V5C9
Organism   Campylobacter upsaliensis RM3940     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 256820..267464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUP3940_RS01330 (CUP3940_0261) - 256855..257796 (-) 942 WP_034958584.1 OmpA family protein -
  CUP3940_RS01335 (CUP3940_0262) - 257786..259153 (-) 1368 WP_004276788.1 MotA/TolQ/ExbB proton channel family protein -
  CUP3940_RS01340 (CUP3940_0263) fbaA 259226..260290 (-) 1065 WP_004276789.1 class II fructose-bisphosphate aldolase -
  CUP3940_RS01345 (CUP3940_0264) - 260290..261111 (-) 822 WP_115632469.1 peptidylprolyl isomerase -
  CUP3940_RS01350 (CUP3940_0265) nth 261188..261823 (+) 636 WP_176318154.1 endonuclease III -
  CUP3940_RS01355 (CUP3940_0266) CJE1441 261820..262464 (+) 645 WP_004276792.1 DNA/RNA non-specific endonuclease Regulator
  CUP3940_RS01360 (CUP3940_0267) - 262464..263081 (+) 618 WP_004276793.1 trimeric intracellular cation channel family protein -
  CUP3940_RS01365 (CUP3940_0268) - 263078..263275 (+) 198 WP_004276794.1 EexN family lipoprotein -
  CUP3940_RS01370 (CUP3940_0269) - 263277..265085 (-) 1809 WP_176318155.1 Na/Pi cotransporter family protein -
  CUP3940_RS01375 (CUP3940_0270) - 265095..265529 (-) 435 WP_176318156.1 hypothetical protein -
  CUP3940_RS01380 (CUP3940_0271) - 265526..265852 (-) 327 WP_176318157.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 25351.39 Da        Isoelectric Point: 9.6260

>NTDB_id=448143 CUP3940_RS01355 WP_004276792.1 261820..262464(+) (CJE1441) [Campylobacter upsaliensis RM3940]
MRILILLAIFSLSLFAKYELDEEFKGYFNGLNCSIVMDKIYYINCYDYHLKGSKALAYEVKAENLVLKQLKKRPRFEEDF
ALAKKYRTRWEDYKNSSYSRGHIAPNASFSYSLASQKAVFLMSNITPQNFQINNKIWNDIEKRERELAHKFQKIAVLNLM
LYDVNPKRIKNHIAVPSFYIKIFKAKDFKECYKVPNINVLDENINTYQISCENF

Nucleotide


Download         Length: 645 bp        

>NTDB_id=448143 CUP3940_RS01355 WP_004276792.1 261820..262464(+) (CJE1441) [Campylobacter upsaliensis RM3940]
GTGAGAATTCTAATTTTACTTGCTATTTTTAGTCTTTCTCTTTTTGCAAAATATGAGCTAGATGAGGAATTTAAAGGCTA
TTTTAACGGCTTAAATTGCTCTATTGTGATGGATAAAATTTATTATATTAATTGCTATGATTATCATCTAAAAGGCTCAA
AAGCTCTAGCTTATGAAGTTAAAGCGGAAAATTTAGTCTTAAAGCAACTTAAAAAAAGACCAAGATTTGAAGAAGATTTT
GCTTTAGCGAAGAAATATAGAACTCGCTGGGAAGATTATAAAAATAGCTCTTATAGTAGAGGACATATCGCACCTAATGC
GTCTTTTAGCTATTCTTTGGCTTCACAAAAGGCTGTATTTTTGATGAGTAATATTACGCCACAAAATTTTCAAATTAACA
ATAAAATTTGGAACGATATAGAAAAAAGAGAAAGAGAGTTAGCACACAAATTTCAAAAAATAGCCGTCTTAAACCTTATG
CTTTATGATGTAAATCCTAAACGCATTAAAAACCATATCGCCGTGCCTAGTTTTTACATTAAAATTTTTAAAGCAAAAGA
TTTTAAAGAGTGCTATAAAGTGCCTAATATTAATGTTTTAGATGAAAATATTAACACTTATCAAATTTCTTGTGAGAATT
TTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(36-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5L4V5C9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

57.5

93.458

0.537
  CJE0566 Campylobacter jejuni RM1221

57.576

92.523

0.533