Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACLO_RS04905 Genome accession   NZ_CP053833
Coordinates   961009..962358 (-) Length   449 a.a.
NCBI ID   WP_128987549.1    Uniprot ID   A0A4Q0V8P9
Organism   Arcobacter cloacae strain LMG 26153     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 956009..967358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLO_RS04880 (ACLO_0975) - 956663..958234 (-) 1572 WP_129012549.1 endonuclease/exonuclease/phosphatase family protein -
  ACLO_RS04885 (ACLO_0976) - 958323..958982 (-) 660 WP_129012550.1 ferritin family protein -
  ACLO_RS04890 (ACLO_0977) - 959244..959648 (+) 405 WP_128987546.1 Fur family transcriptional regulator -
  ACLO_RS04895 (ACLO_0978) - 959656..960579 (-) 924 WP_129012551.1 calcium/sodium antiporter -
  ACLO_RS04900 (ACLO_0979) ybeY 960581..961000 (-) 420 WP_129012552.1 rRNA maturation RNase YbeY -
  ACLO_RS04905 (ACLO_0980) radA 961009..962358 (-) 1350 WP_128987549.1 DNA repair protein RadA Machinery gene
  ACLO_RS04910 (ACLO_0981) - 962456..962944 (+) 489 WP_129012553.1 RNase H family protein -
  ACLO_RS04915 (ACLO_0982) - 962936..963919 (-) 984 WP_129012554.1 lipid A deacylase LpxR family protein -
  ACLO_RS04920 (ACLO_0983) - 963979..964542 (+) 564 WP_129012555.1 YqiA/YcfP family alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49321.73 Da        Isoelectric Point: 6.3799

>NTDB_id=448023 ACLO_RS04905 WP_128987549.1 961009..962358(-) (radA) [Arcobacter cloacae strain LMG 26153]
MAKKKISLFECQHCGEQSTKWLGKCPNCGSWDSFIELNQEQQEVLKHSSKIINTTSKAKPITQIEQDDVTRFSSFNDEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGSISKSGKKVLYVSGEESAGQIKLRANRLDANHDDLFLLSEIKLEEIQD
ELLRQNYEVVIIDSIQTIYSSNLTSAPGSVSQVREITFELMRKAKESNIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GEASRELRMLRGFKNRFGSTSEIGIFEMTAEGLISAKDIASKFFDKSKAQSGSALTVVMEGSRAIILEVQALVTESTYPN
PKRSATGFDANRLTMLLALLEKKIDLPLNNYDVFINISGGIKIKESSADLAVIAAIISSFRDRPISKESAFIGEVSLTGE
IKDVYSIDLRLKEAQAQGMKKAVIAQKTNLKLDIKTFAVDEVSKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=448023 ACLO_RS04905 WP_128987549.1 961009..962358(-) (radA) [Arcobacter cloacae strain LMG 26153]
ATGGCAAAAAAGAAAATATCACTTTTTGAGTGTCAACATTGTGGAGAACAATCTACAAAATGGCTAGGAAAATGTCCAAA
TTGTGGTTCATGGGACTCTTTTATAGAGTTAAATCAAGAACAACAAGAGGTTTTAAAACATTCATCAAAAATCATAAATA
CAACTTCAAAAGCAAAACCTATAACACAGATTGAACAAGATGATGTAACAAGATTTTCTTCTTTTAATGATGAATTTGAT
TTAGTTTTAGGAGGAGGAATAGTTCCAGGAAGTTTAACTTTAATTGGAGGAAGTCCAGGAGTTGGAAAATCAACCCTTTT
ATTAAAAGTTGCAGGAAGTATCTCAAAATCAGGGAAAAAAGTGCTTTATGTTTCAGGGGAAGAAAGTGCTGGGCAGATAA
AACTAAGAGCAAATAGACTTGATGCAAACCATGATGACCTATTTTTATTAAGTGAAATAAAACTTGAAGAGATTCAAGAT
GAACTTTTAAGACAAAATTATGAAGTAGTGATTATAGATTCTATTCAAACTATTTATTCATCAAATCTAACATCAGCACC
AGGAAGTGTTTCACAAGTAAGAGAAATCACCTTTGAATTAATGCGTAAAGCAAAAGAGTCAAATATTGCTATGTTTATTA
TTGGACATATTACAAAAGATGGAAGTATTGCAGGTCCAAGAGTTTTGGAACATATGGTTGATACTGTTTTATATTTTGAG
GGAGAAGCTAGTAGAGAACTGCGAATGCTGCGAGGTTTTAAAAACCGATTTGGTTCAACTTCGGAAATTGGTATTTTTGA
GATGACAGCGGAGGGATTAATAAGTGCAAAAGATATAGCTTCAAAGTTTTTTGATAAAAGTAAAGCTCAAAGTGGTTCTG
CTCTTACAGTTGTTATGGAGGGAAGTCGTGCTATAATTTTGGAAGTTCAAGCACTTGTAACTGAAAGCACCTACCCAAAT
CCAAAAAGAAGTGCCACAGGTTTTGATGCAAATAGACTAACTATGCTTTTAGCTTTGCTTGAAAAAAAGATTGATTTACC
ACTAAATAATTATGATGTTTTTATAAATATAAGTGGTGGTATAAAAATCAAAGAGAGTTCAGCCGATTTAGCTGTGATTG
CTGCAATTATTTCATCTTTTAGAGATAGACCTATTTCAAAAGAGTCAGCATTTATAGGTGAAGTTTCCCTAACTGGTGAA
ATAAAAGATGTTTATTCTATTGATTTAAGGTTAAAAGAAGCACAAGCTCAAGGTATGAAAAAAGCTGTAATTGCCCAAAA
AACAAATCTGAAACTTGATATTAAAACTTTTGCGGTTGATGAAGTATCAAAGATGATAGAACTATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-427)

AAA domain (AAA_25)

(74-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q0V8P9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.698

95.768

0.486
  radA Streptococcus pneumoniae Rx1

47.137

100

0.477
  radA Streptococcus pneumoniae D39

47.137

100

0.477
  radA Streptococcus pneumoniae R6

47.137

100

0.477
  radA Streptococcus pneumoniae TIGR4

47.137

100

0.477
  radA Streptococcus mitis NCTC 12261

48.956

95.991

0.47
  radA Streptococcus mitis SK321

48.956

95.991

0.47