Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CLLT_RS04700 Genome accession   NZ_CP053830
Coordinates   888142..888795 (+) Length   217 a.a.
NCBI ID   WP_074691852.1    Uniprot ID   -
Organism   Campylobacter lari subsp. lari strain LMG 8846     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 883142..893795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLLT_RS04675 (CLLT_0932) - 883239..884759 (-) 1521 WP_012661636.1 inorganic phosphate transporter -
  CLLT_RS04680 (CLLT_0933) pdxA 884806..885906 (-) 1101 WP_012661637.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  CLLT_RS04685 (CLLT_0934) - 885903..886670 (-) 768 WP_012661638.1 pyridoxine 5'-phosphate synthase -
  CLLT_RS04690 (CLLT_0935) - 886726..887691 (+) 966 WP_074691855.1 exopolyphosphatase -
  CLLT_RS04695 (CLLT_0936) - 887702..888145 (+) 444 WP_012661640.1 GatB/YqeY domain-containing protein -
  CLLT_RS04700 (CLLT_0937) CJE0566 888142..888795 (+) 654 WP_074691852.1 DNA/RNA non-specific endonuclease Regulator
  CLLT_RS04705 (CLLT_0938) dnaK 888829..890697 (-) 1869 WP_074691849.1 molecular chaperone DnaK -
  CLLT_RS04710 (CLLT_0939) grpE 890719..891228 (-) 510 WP_074691845.1 nucleotide exchange factor GrpE -
  CLLT_RS04715 (CLLT_0940) - 891225..892007 (-) 783 WP_012661644.1 HrcA family transcriptional regulator -
  CLLT_RS07925 - 892250..892381 (+) 132 WP_255197728.1 hypothetical protein -
  CLLT_RS04720 (CLLT_0941) - 892370..892999 (-) 630 WP_012661645.1 hypothetical protein -
  CLLT_RS04725 (CLLT_0942) - 892996..893226 (-) 231 WP_012661646.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 26047.08 Da        Isoelectric Point: 9.7936

>NTDB_id=447983 CLLT_RS04700 WP_074691852.1 888142..888795(+) (CJE0566) [Campylobacter lari subsp. lari strain LMG 8846]
MKKALILCTLALSSFAYTQYELDPSFKKYFQNCSLLMDKYYYINCYDYNYKGTKAIAYKLEARILNQKHIKKRPKFKDDT
NIPKKYRTYWEDYIKSGYTRGHVVPNQSMNTTPQAQLSTFLMSNITPQKKDINAKIWNEIEQRERYLAKKYKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNYSECYKVPNNDNFAEFDKNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=447983 CLLT_RS04700 WP_074691852.1 888142..888795(+) (CJE0566) [Campylobacter lari subsp. lari strain LMG 8846]
ATGAAAAAAGCCTTAATTCTTTGCACTCTAGCCTTAAGCTCTTTTGCATACACTCAATATGAGCTTGATCCTAGCTTTAA
AAAGTATTTTCAAAATTGCTCTTTATTGATGGATAAGTATTATTATATTAATTGTTATGATTATAACTATAAAGGCACTA
AAGCAATAGCTTATAAACTTGAAGCTAGAATTTTAAATCAAAAACACATTAAAAAACGCCCAAAATTTAAAGATGATACT
AACATTCCTAAAAAATATAGAACTTATTGGGAAGATTATATAAAAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATACAACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAATATAACCCCGCAAAAAAAAGATATCAATG
CAAAAATTTGGAATGAAATCGAACAAAGAGAAAGATATCTTGCAAAAAAATACAAAGAATTAGAAGTGCTAAATTTAGTG
CTTTATGATGATAAGCCAAAACGCATTAAAAATAATATCGCCATTCCTAGTTTTTATGTAAAAATTTTAAAAGCTAAAAA
TTATAGTGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAGAATTTGATAAAAATTATTTTAAAGAAGATTGTAAGA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(36-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

59.908

100

0.599
  CJE1441 Campylobacter jejuni RM1221

64.179

92.627

0.594