Detailed information NTG0447981

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: CLLT_RS01975
• Genome accession: NZ_CP053830
• Coordinates: 371100..372491 (+)
• Length: 463 a.a.
• NCBI ID: WP_074692605.1
• Uniprot ID: -
• Organism: Campylobacter lari subsp. lari strain LMG 8846
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 366100..377491

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLLT_RS01960 (CLLT_0390)	-	366485..367129 (+)	645	WP_012661128.1	HAD family hydrolase	-
CLLT_RS01965 (CLLT_0391)	nifJ	367247..370801 (+)	3555	WP_070255998.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
CLLT_RS01970 (CLLT_0392)	-	370868..371128 (+)	261	WP_143297314.1	hypothetical protein	-
CLLT_RS01975 (CLLT_0393)	ctsD	371100..372491 (+)	1392	WP_074692605.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
CLLT_RS01980 (CLLT_0394)	-	372472..372801 (+)	330	WP_012661132.1	hypothetical protein	-
CLLT_RS01985 (CLLT_0395)	-	372794..374308 (+)	1515	WP_074692603.1	GspE/PulE family protein	-
CLLT_RS01990 (CLLT_0396)	-	374305..375465 (+)	1161	WP_074692601.1	type II secretion system F family protein	-
CLLT_RS01995 (CLLT_0397)	-	375462..376214 (-)	753	WP_074692600.1	TSUP family transporter	-
CLLT_RS02000 (CLLT_0398)	-	376199..376948 (-)	750	WP_074692598.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52523.36 Da
• Isoelectric Point: 7.9605

>NTDB_id=447981 CLLT_RS01975 WP_074692605.1 371100..372491(+) (ctsD) [Campylobacter lari subsp. lari strain LMG 8846]
MKKIIFLFISILSFTNIFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSAKEADNLVISTDKFDFWEKIA
EEIQALLDENTTKPIINTNAGIITLNATLYELARVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide

• Length: 1392 bp

>NTDB_id=447981 CLLT_RS01975 WP_074692605.1 371100..372491(+) (ctsD) [Campylobacter lari subsp. lari strain LMG 8846]
ATGAAAAAAATAATATTTTTATTCATTAGTATTTTAAGTTTTACAAATATTTTTGCTTCGCAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGATTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTTCATTATATAAGCTCTATTAGAGAAGGGCAAAGCATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AGGGTGATTATGATAGTGCTAAAGAAGCAGATAATTTAGTCATTAGTACAGATAAATTTGATTTTTGGGAGAAAATTGCA
GAAGAAATTCAAGCTTTACTTGATGAAAATACTACTAAGCCCATTATTAATACCAATGCGGGAATTATTACTTTAAATGC
TACCTTGTATGAGCTTGCAAGAGTTGAAAAATATCTAAAAGACTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGCCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAAAAATATTAATCTTAAAGCTAATGTTGAAACTAAGGCAATTTT
AAATTTATTACAAGAAAATGGCAAAACCACTGTACTTTCTAACCCAAAACTCATGGCACTTAATAATCAGCAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCAGAAATTTCAGATGATCATAAAATCATGCTTAG
GATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAACCAAGAAATATAGCACCAGATA
CTATACAAAAAAAGCTTTCTACTGTAGTTGAAGTGGATGATGGGCAAACTTTAATTTTGGGTGGATTGATTAGCAAAAAT
ACGATTAGTAATCATAATGAAGTAAGTGCTTTATCTAAAATACCACTTTTTGGTGCCTTGTTTCAAGGAAAGCAAAATTT
AGAAGATATTAGTGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGTTTGAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	57.051	100	0.577