Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CCVT_RS03585 Genome accession   NZ_CP053826
Coordinates   738902..739675 (+) Length   257 a.a.
NCBI ID   WP_018136700.1    Uniprot ID   -
Organism   Campylobacter curvus strain ATCC 35224     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 733902..744675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCVT_RS03570 (CCVT_0705) - 735522..736340 (-) 819 WP_018136703.1 HDOD domain-containing protein -
  CCVT_RS03575 (CCVT_0706) ilvC 736484..737506 (+) 1023 WP_018136702.1 ketol-acid reductoisomerase -
  CCVT_RS03580 (CCVT_0707) - 737511..738905 (+) 1395 WP_018136701.1 divergent polysaccharide deacetylase family protein -
  CCVT_RS03585 (CCVT_0708) dprA 738902..739675 (+) 774 WP_018136700.1 DNA-processing protein DprA Machinery gene
  CCVT_RS03590 (CCVT_0709) ruvX 739672..740055 (+) 384 WP_018136699.1 Holliday junction resolvase RuvX -
  CCVT_RS03595 (CCVT_0710) - 740098..740925 (-) 828 WP_018136698.1 hypothetical protein -
  CCVT_RS03600 (CCVT_0711) queA 740922..741953 (-) 1032 WP_018136697.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CCVT_RS03605 (CCVT_0712) tatC 741940..742689 (-) 750 WP_018136696.1 twin-arginine translocase subunit TatC -
  CCVT_RS03610 (CCVT_0713) tatB 742689..743117 (-) 429 WP_009649969.1 Sec-independent protein translocase protein TatB -
  CCVT_RS03615 (CCVT_0714) hemW 743183..744229 (-) 1047 WP_018136695.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 27714.06 Da        Isoelectric Point: 5.4515

>NTDB_id=447942 CCVT_RS03585 WP_018136700.1 738902..739675(+) (dprA) [Campylobacter curvus strain ATCC 35224]
MKFLARDELPACLMHLENTPKGLYAIGDVSLLNLPKVAVVGSRKASVYTKECVRDLCTRLKNAGVCVVSGGAIGVDIAAH
KAAMPLTIGIFASGLDIIYPPSNAKFIKEIYENSLALSEYENGEPPLAYRFLERNRIVVALCEALVVAQADVKSGSMQSA
RLAGELGVPVFVLPQRINESGGTNKLLSEGKATLISDYDEFAAKFGDVKFASSSDEILEFCKNGASLDDALSKFGDKIYE
YELLGKLEISNLRVKAL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=447942 CCVT_RS03585 WP_018136700.1 738902..739675(+) (dprA) [Campylobacter curvus strain ATCC 35224]
ATGAAATTTTTAGCTAGAGACGAGCTGCCCGCTTGTTTGATGCATCTTGAAAATACACCAAAAGGACTCTACGCGATCGG
CGATGTCTCGCTTTTAAATTTACCAAAGGTCGCAGTCGTGGGTTCTAGAAAGGCGAGCGTTTATACTAAAGAGTGCGTGA
GAGATCTTTGCACTAGACTGAAAAATGCCGGTGTTTGCGTCGTGAGCGGCGGAGCTATCGGAGTGGATATCGCTGCACAT
AAGGCCGCGATGCCCCTTACTATCGGTATCTTTGCAAGCGGACTTGATATCATCTACCCGCCCTCAAATGCAAAATTTAT
AAAAGAAATCTACGAAAATTCCTTGGCCCTTAGCGAATACGAAAACGGCGAGCCGCCGCTTGCTTATAGATTTTTAGAGC
GCAACCGCATAGTAGTGGCGCTTTGCGAGGCGCTAGTCGTAGCTCAGGCCGACGTTAAAAGCGGCTCGATGCAAAGTGCG
AGACTGGCCGGAGAGCTTGGCGTACCGGTGTTTGTCCTGCCTCAGCGCATCAACGAAAGCGGTGGTACGAATAAGCTTTT
AAGCGAAGGCAAAGCCACGCTGATAAGCGACTACGACGAGTTTGCGGCGAAATTTGGCGATGTAAAATTCGCATCTTCAA
GCGATGAAATTTTAGAATTTTGCAAAAACGGAGCGAGCTTGGACGATGCCTTATCGAAATTTGGCGATAAAATTTACGAA
TACGAGCTTCTTGGCAAGCTTGAGATATCAAATTTAAGAGTAAAAGCCCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(5-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.74

89.883

0.537
  dprA Helicobacter pylori 26695

45.2

97.276

0.44