Detailed information NTG0447853

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: ST90730_RS09315
• Genome accession: NZ_CP065481
• Coordinates: 1782292..1783392 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain 90730
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1777292..1788392

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST90730_RS09290 (ST90730_09310)	pgsA	1777834..1778376 (-)	543	WP_011227624.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
ST90730_RS09295 (ST90730_09315)	-	1778389..1779246 (-)	858	WP_011226703.1	helix-turn-helix domain-containing protein	-
ST90730_RS09300 (ST90730_09320)	-	1779305..1780582 (-)	1278	WP_011227625.1	pitrilysin family protein	-
ST90730_RS09305 (ST90730_09325)	-	1780584..1781834 (-)	1251	WP_011681762.1	pitrilysin family protein	-
ST90730_RS09310 (ST90730_09330)	yaaA	1781912..1782289 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
ST90730_RS09315 (ST90730_09335)	recF	1782292..1783392 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
ST90730_RS09320 (ST90730_09340)	guaB	1783561..1785042 (-)	1482	WP_011227627.1	IMP dehydrogenase	-
ST90730_RS09325 (ST90730_09345)	trpS	1785219..1786241 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
ST90730_RS09330 (ST90730_09350)	-	1786669..1787541 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=447853 ST90730_RS09315 WP_002947786.1 1782292..1783392(+) (recF) [Streptococcus thermophilus strain 90730]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=447853 ST90730_RS09315 WP_002947786.1 1782292..1783392(+) (recF) [Streptococcus thermophilus strain 90730]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432