Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPY11_RS07935 Genome accession   NZ_CP053820
Coordinates   1776406..1777830 (+) Length   474 a.a.
NCBI ID   WP_123011449.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA10G     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1771406..1782830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY11_RS07915 (HPY11_07960) - 1771802..1772587 (-) 786 WP_000718973.1 adenosylcobinamide-GDP ribazoletransferase -
  HPY11_RS07920 (HPY11_07965) cobT 1772587..1773612 (-) 1026 WP_175246106.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  HPY11_RS07925 (HPY11_07970) msrB 1774097..1774543 (-) 447 WP_001959623.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HPY11_RS07930 (HPY11_07975) - 1774889..1776262 (+) 1374 WP_000117954.1 L-cystine transporter -
  HPY11_RS07935 (HPY11_07980) sbcB 1776406..1777830 (+) 1425 WP_123011449.1 exodeoxyribonuclease I Machinery gene
  HPY11_RS07940 (HPY11_07985) - 1777862..1778236 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  HPY11_RS07945 (HPY11_07990) - 1778227..1778901 (+) 675 WP_000266239.1 LrgB family protein -
  HPY11_RS07950 (HPY11_07995) cdd 1779071..1779958 (+) 888 WP_001245900.1 cytidine deaminase -
  HPY11_RS07955 (HPY11_08000) - 1780117..1780992 (+) 876 WP_123011448.1 AEC family transporter -
  HPY11_RS07960 (HPY11_08005) purT 1781146..1782321 (+) 1176 WP_000468083.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54544.91 Da        Isoelectric Point: 6.0792

>NTDB_id=447844 HPY11_RS07935 WP_123011449.1 1776406..1777830(+) (sbcB) [Vibrio cholerae strain SA10G]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTTPENLGSLAIRVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=447844 HPY11_RS07935 WP_123011449.1 1776406..1777830(+) (sbcB) [Vibrio cholerae strain SA10G]
ATGCAGCAAGAACACCAGCCCACCTTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTAGCAGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCACCAGCCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCAATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCCGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGGTTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTACACCGGAGAATCTGGGCAGCTTAGCGATCCGGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.945

100

0.989