Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   HPY17_RS17620 Genome accession   NZ_CP053817
Coordinates   793587..794681 (-) Length   364 a.a.
NCBI ID   WP_095489790.1    Uniprot ID   A0A5Q6PNY6
Organism   Vibrio cholerae strain SA7G     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 788587..799681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY17_RS17610 (HPY17_17670) - 790339..791004 (+) 666 WP_175247696.1 flagellar brake protein -
  HPY17_RS17615 (HPY17_17675) luxQ 790996..793569 (-) 2574 WP_175247697.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  HPY17_RS17620 (HPY17_17680) luxP 793587..794681 (-) 1095 WP_095489790.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  HPY17_RS17625 (HPY17_17685) traF 794894..796054 (-) 1161 WP_175247698.1 conjugal transfer protein TraF -
  HPY17_RS17630 (HPY17_17690) - 796156..796461 (-) 306 WP_000429063.1 GIY-YIG nuclease family protein -
  HPY17_RS17635 (HPY17_17695) - 796478..797128 (-) 651 WP_001025636.1 YceH family protein -
  HPY17_RS17640 (HPY17_17700) - 797171..797368 (-) 198 WP_175246528.1 hypothetical protein -
  HPY17_RS17645 (HPY17_17705) - 797556..797876 (+) 321 WP_001089529.1 DUF496 family protein -
  HPY17_RS17650 (HPY17_17710) - 798268..798519 (+) 252 WP_017686428.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41211.89 Da        Isoelectric Point: 6.5074

>NTDB_id=447822 HPY17_RS17620 WP_095489790.1 793587..794681(-) (luxP) [Vibrio cholerae strain SA7G]
MKRKLISPLFLMAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQKQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQFYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNEAHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKAVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=447822 HPY17_RS17620 WP_095489790.1 793587..794681(-) (luxP) [Vibrio cholerae strain SA7G]
ATGAAAAGAAAGCTAATATCCCCGCTGTTTCTGATGGCAGCGCTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTCCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAAAACAACCCGTTATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAATATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCAAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGATTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGCGCGCAATTATT
GGCGCAATTTTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGACACCTTCATTCAAGATATGAACGAGGCGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAG
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGATGT
GGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTCGTCAATGGTTGGGGAGGCGGCTCGGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACAGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCTGAA
GCGATTAAATGGGATTTGGAAGGGAAAGCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCGCGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q6PNY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

98.352

100

0.984