Detailed information NTG0447750

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: ST90729_RS09650
• Genome accession: NZ_CP065480
• Coordinates: 1863202..1864302 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain 90729
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1858202..1869302

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST90729_RS09625 (ST90729_09610)	pgsA	1858744..1859286 (-)	543	WP_024704275.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
ST90729_RS09630 (ST90729_09615)	-	1859299..1860156 (-)	858	WP_011681760.1	helix-turn-helix domain-containing protein	-
ST90729_RS09635 (ST90729_09620)	-	1860215..1861492 (-)	1278	WP_141326658.1	pitrilysin family protein	-
ST90729_RS09640 (ST90729_09625)	-	1861494..1862744 (-)	1251	WP_180477205.1	pitrilysin family protein	-
ST90729_RS09645 (ST90729_09630)	yaaA	1862822..1863199 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
ST90729_RS09650 (ST90729_09635)	recF	1863202..1864302 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
ST90729_RS09655 (ST90729_09640)	guaB	1864471..1865952 (-)	1482	WP_011227627.1	IMP dehydrogenase	-
ST90729_RS09660 (ST90729_09645)	trpS	1866129..1867151 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
ST90729_RS09665 (ST90729_09650)	-	1867579..1868451 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=447750 ST90729_RS09650 WP_002947786.1 1863202..1864302(+) (recF) [Streptococcus thermophilus strain 90729]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=447750 ST90729_RS09650 WP_002947786.1 1863202..1864302(+) (recF) [Streptococcus thermophilus strain 90729]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432