Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   ST90729_RS08820 Genome accession   NZ_CP065480
Coordinates   1709300..1709617 (-) Length   105 a.a.
NCBI ID   WP_141326604.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90729     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1704300..1714617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90729_RS08790 (ST90729_08755) - 1704660..1705322 (-) 663 WP_023909970.1 type II CAAX endopeptidase family protein -
  ST90729_RS08795 (ST90729_08760) - 1705419..1705862 (-) 444 WP_347116609.1 CAAX protease -
  ST90729_RS08800 - 1705936..1706361 (-) 426 WP_087010196.1 CPBP family intramembrane glutamic endopeptidase -
  ST90729_RS08805 (ST90729_08770) - 1706604..1706801 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  ST90729_RS08810 (ST90729_08775) - 1707050..1708243 (-) 1194 WP_014608740.1 acetate kinase -
  ST90729_RS08815 (ST90729_08780) comGH 1708299..1709255 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  ST90729_RS08820 (ST90729_08785) comGG 1709300..1709617 (-) 318 WP_141326604.1 competence type IV pilus minor pilin ComGG Machinery gene
  ST90729_RS08825 (ST90729_08790) comGF 1709595..1710032 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  ST90729_RS08830 (ST90729_08795) comGE 1710016..1710309 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  ST90729_RS08835 (ST90729_08800) comGD 1710281..1710709 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  ST90729_RS08840 (ST90729_08805) comGC 1710669..1710995 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  ST90729_RS08845 (ST90729_08810) comGB 1710992..1712092 (-) 1101 WP_271307389.1 competence type IV pilus assembly protein ComGB Machinery gene
  ST90729_RS08850 (ST90729_08815) comGA/cglA/cilD 1711974..1712915 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  ST90729_RS08855 (ST90729_08820) - 1712996..1713358 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11810.91 Da        Isoelectric Point: 10.6334

>NTDB_id=447741 ST90729_RS08820 WP_141326604.1 1709300..1709617(-) (comGG) [Streptococcus thermophilus strain 90729]
MLLKKQVRGGVLLYALFMAGIFTLLLQVYLERVVASSRQNQAQIVASQSRLMAEMTMDLVDKEAGAFSFSQGTTTYEVKG
KQVVVRVASKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=447741 ST90729_RS08820 WP_141326604.1 1709300..1709617(-) (comGG) [Streptococcus thermophilus strain 90729]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTACACTCCTTCTTCA
GGTTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTGCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGGTTGTCAGAGTTGCCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

45.455

94.286

0.429
  comGG Streptococcus mutans UA159

45.455

94.286

0.429
  comGG/cglG Streptococcus pneumoniae Rx1

43.333

85.714

0.371
  comGG/cglG Streptococcus pneumoniae D39

43.333

85.714

0.371
  comGG/cglG Streptococcus pneumoniae R6

43.333

85.714

0.371
  comGG/cglG Streptococcus pneumoniae TIGR4

43.333

85.714

0.371
  comGG/cglG Streptococcus mitis NCTC 12261

42.222

85.714

0.362