Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   HPY08_RS16635 Genome accession   NZ_CP053809
Coordinates   701394..703454 (-) Length   686 a.a.
NCBI ID   WP_001885480.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP7G     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 696394..708454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY08_RS16620 (HPY08_16715) clcA 697428..698834 (+) 1407 WP_000107452.1 H(+)/Cl(-) exchange transporter ClcA -
  HPY08_RS16625 (HPY08_16720) - 698981..699943 (+) 963 WP_001104014.1 TDT family transporter -
  HPY08_RS16630 (HPY08_16725) cqsA 700140..701309 (+) 1170 WP_001039905.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HPY08_RS16635 (HPY08_16730) cqsS 701394..703454 (-) 2061 WP_001885480.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  HPY08_RS16640 (HPY08_16735) - 703551..706592 (-) 3042 WP_114717112.1 AAA family ATPase -
  HPY08_RS16645 (HPY08_16740) - 706594..707733 (-) 1140 WP_114717113.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78213.92 Da        Isoelectric Point: 5.2908

>NTDB_id=447677 HPY08_RS16635 WP_001885480.1 701394..703454(-) (cqsS) [Vibrio cholerae strain SP7G]
MIVSMDVIKRVYRYAEPNLSLVGWMGMLGFPAYYFIWEYWFPQDYENLGLRLAASALFAVLAFRDSLPKKWQCYLPYYYL
LTIGFCLPFFFSFMMLMNNWSTIWAMSFMASIFLHILLVHDTRVMAIQALSSIGLSYLVVYGIADSQPSTLIEWPFMPIF
LFTYVFGNLFFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKASIDVVRTMVPKPQAAAQGEYALDAQELDLLHQILN
EADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQPFDFFGSDTLLTYALFN
LLKNAFYYQKEHFSVRITIEQTSEQNLIRVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGTIRCAS
QQGQWTEFVLSFPRYDSDTVNEIKTELLKTKSLIYIGSNQAIVRELNHLAVDDEFGFTAISAQQAVRRQDYEFEFDLILL
DLDDATTQGELLPKLEGTLSFAEGCIGYVYDPGKTYAVNINRYLHIQPISIHSILRKPRKIIERLLFEQDSLSMNRNVIP
LQKSRHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRGSEHDY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWI

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=447677 HPY08_RS16635 WP_001885480.1 701394..703454(-) (cqsS) [Vibrio cholerae strain SP7G]
GTGATAGTGAGCATGGATGTAATAAAGAGAGTGTATCGATATGCAGAACCTAATCTGTCCTTAGTTGGATGGATGGGGAT
GCTTGGCTTTCCTGCCTACTACTTTATTTGGGAATATTGGTTTCCACAGGACTATGAGAACCTAGGCTTACGCCTTGCTG
CCTCTGCGTTATTTGCAGTACTTGCATTTCGAGATTCTTTACCCAAAAAATGGCAGTGCTATTTGCCATACTATTATTTG
TTGACGATAGGTTTCTGCTTGCCTTTCTTCTTCTCTTTTATGATGTTGATGAATAACTGGTCAACAATTTGGGCGATGTC
GTTCATGGCGTCCATTTTCTTGCATATTCTCCTAGTACACGATACCAGAGTGATGGCGATACAAGCGTTGTCCTCTATTG
GATTATCCTACCTCGTTGTGTACGGTATAGCCGATTCTCAACCATCGACGTTGATCGAATGGCCATTTATGCCGATATTT
TTATTCACGTATGTGTTTGGGAATCTGTTCTTTTTTCGTAACCAGATCTCTCATGAAACCAAAGTATCGATTGCCAAAAC
GTTTGGTGCAGGGATTGCCCACGAAATGCGTAATCCACTCAGTGCCTTGAAAGCGTCGATTGATGTTGTGCGAACCATGG
TTCCCAAGCCGCAAGCAGCCGCTCAGGGAGAGTATGCTTTGGATGCGCAAGAGCTGGATCTACTGCATCAAATTTTGAAT
GAAGCTGATGATGTCATTTACTCTGGCAATAACGCGATTGATTTGCTGCTCACCTCGATTGATGAAAACCGCGTTTCGCC
GGCGAGTTTTAAAAAACACTCAGTAGTGGATGTGATTGAAAAAGCGGTGAAAACCTTCCCGTATAAAAATGCAGCGGATC
AGCACTCGGTAGAGCTTGAAGTGCATCAGCCGTTTGACTTTTTTGGCAGTGATACTCTACTGACCTATGCGTTATTTAAC
CTGTTGAAAAATGCCTTCTATTATCAAAAAGAGCATTTTTCAGTTCGTATTACCATTGAACAAACCAGTGAGCAGAACCT
TATCCGAGTCCGTGATAACGGCGTGGGGATTGCGCCAGAGATGTTGGAAGACATTTTCCGTGATTTCTATACCTTCGGTA
AAAATGGCAGCTATGGGCTAGGATTGCCATTTTGCCGCAAAGTGATGACCGCATTTGGAGGGACGATTCGCTGTGCGTCT
CAACAAGGTCAGTGGACAGAATTCGTATTGAGCTTTCCTCGTTACGATTCCGATACGGTTAACGAGATAAAAACAGAACT
GCTGAAAACCAAATCGCTCATTTATATCGGCTCAAATCAAGCTATCGTTCGAGAGTTAAATCATCTCGCGGTGGACGATG
AGTTTGGCTTTACTGCCATTTCTGCACAGCAAGCAGTAAGACGCCAAGATTATGAGTTTGAGTTCGACCTTATTTTGCTC
GACCTTGATGACGCCACTACGCAGGGAGAACTACTGCCGAAACTTGAAGGTACATTGAGTTTTGCAGAAGGCTGTATCGG
CTATGTGTATGACCCGGGTAAAACGTACGCGGTAAACATTAACCGTTATCTGCACATTCAGCCGATCAGTATTCACTCTA
TTCTCAGAAAGCCGCGGAAAATCATCGAGCGCTTGTTGTTCGAGCAAGATTCTTTATCGATGAATCGTAATGTGATCCCC
TTGCAAAAGAGTCGACATGAACGGCGTATTTTGGTGGTTGACGATAATCAATCGATCCGAACTTTTACGGCTATTTTGCT
TGAGCAACAAGGTTATGAAGTGGTGCAAGCCAACGATGGTAGTGAAGTGCTCAAGCATATGGAGAGTCAAAATATCGATT
TAGTGTTGATGGACATTGAAATGCCGAATGTTGGGGGATTAGAAGCGACGCGTTTAATTCGTGGCTCTGAGCATGATTAC
AAAAATATTCCGATCATTGGTTACACCGGTGATAACAGCCCCAAAACCTTGGCTCTGGTACAAACCTCTGGCATGAATGA
TTTCATTGTGAAGCCTGCTGACCGTGATGTATTGCTAAATAAAGTGGCAGCTTGGATATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-413)

Response regulator receiver domain (Response_reg)

(570-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

92.566

100

0.926