Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   HPY08_RS10565 Genome accession   NZ_CP053808
Coordinates   2391298..2391909 (+) Length   203 a.a.
NCBI ID   WP_148552798.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP7G     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2386298..2396909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY08_RS10545 (HPY08_10570) - 2386634..2387551 (-) 918 WP_175242699.1 ABC transporter ATP-binding protein -
  HPY08_RS10550 (HPY08_10575) - 2387932..2389578 (-) 1647 WP_114708655.1 SulP family inorganic anion transporter -
  HPY08_RS10555 (HPY08_10580) can 2389726..2390394 (+) 669 WP_001114116.1 carbonate dehydratase -
  HPY08_RS10560 (HPY08_10585) hpt 2390469..2391002 (-) 534 WP_000683351.1 hypoxanthine phosphoribosyltransferase -
  HPY08_RS10565 (HPY08_10590) hapR 2391298..2391909 (+) 612 WP_148552798.1 quorum-sensing master transcriptional regulator HapR Regulator
  HPY08_RS10570 (HPY08_10595) rsmI 2392119..2392985 (-) 867 WP_000131547.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HPY08_RS10575 (HPY08_10600) - 2393055..2394860 (+) 1806 WP_001015487.1 penicillin-binding protein activator -
  HPY08_RS10580 (HPY08_10605) - 2394847..2395215 (+) 369 WP_001893625.1 YraN family protein -
  HPY08_RS10585 (HPY08_10610) - 2395219..2395809 (+) 591 WP_000887295.1 phosphoheptose isomerase -
  HPY08_RS10590 (HPY08_10615) - 2395812..2396381 (+) 570 WP_000836325.1 BON domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23778.48 Da        Isoelectric Point: 6.3376

>NTDB_id=447661 HPY08_RS10565 WP_148552798.1 2391298..2391909(+) (hapR) [Vibrio cholerae strain SP7G]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKTNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIRNMFMKAMERDELCEKHDV
DNMASLFHGIFYSIFLQVNRLGEQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=447661 HPY08_RS10565 WP_148552798.1 2391298..2391909(+) (hapR) [Vibrio cholerae strain SP7G]
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCGGCTATCGCCTCAAAAACGCAAACTACAACTGATGGAAATCGCGTT
GGAAGTGTTTGCTAAACGCGGCATTGGTCGTGGTGGTCACGCAGATATTGCCGAGATTGCGCAAGTCTCCGTTGCAACAG
TGTTCAACTACTTCCCAACTCGTGAAGACTTGGTTGACGATGTGCTGAATTTTGTGGTTCGTCAGTACTCCAATTTTTTG
ACCGATCACATCGATCTTGATTTGGATGTGAAAACCAACCTACAAACTCTGTGCAAAGAGATGGTGAAATTGGCGATGAC
CGATTGTCACTGGCTCAAAGTCTGGTTTGAGTGGAGTGCTTCAACCCGTGACGAAGTTTGGCCACTGTTTGTTTCCACCA
ACCGAACTAACCAACTGCTGATCAGAAACATGTTTATGAAAGCGATGGAACGTGACGAATTGTGTGAGAAACACGATGTC
GATAACATGGCCAGCCTGTTCCACGGCATCTTCTACTCCATCTTCTTACAAGTGAACCGTTTAGGTGAACAAGAAGCAGT
GTATAAGTTGGTCGATAGCTACCTCAATATGCTGTGTATCTATAAGAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

99.015

100

0.99
  hapR Vibrio cholerae strain A1552

99.015

100

0.99
  opaR Vibrio parahaemolyticus RIMD 2210633

72.222

97.537

0.704