Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   HPY06_RS16420 Genome accession   NZ_CP053805
Coordinates   605102..607162 (-) Length   686 a.a.
NCBI ID   WP_367889783.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL6Y     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 600102..612162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY06_RS16405 (HPY06_16475) clcA 601136..602542 (+) 1407 WP_000107452.1 H(+)/Cl(-) exchange transporter ClcA -
  HPY06_RS16410 (HPY06_16480) - 602689..603651 (+) 963 WP_001104009.1 TDT family transporter -
  HPY06_RS16415 (HPY06_16485) cqsA 603848..605017 (+) 1170 WP_001039903.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HPY06_RS16420 (HPY06_16490) cqsS 605102..607162 (-) 2061 WP_367889783.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  HPY06_RS16425 (HPY06_16495) - 607259..610300 (-) 3042 WP_175231617.1 AAA family ATPase -
  HPY06_RS16430 (HPY06_16500) - 610302..611441 (-) 1140 WP_175231619.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78244.93 Da        Isoelectric Point: 5.2908

>NTDB_id=447581 HPY06_RS16420 WP_367889783.1 605102..607162(-) (cqsS) [Vibrio cholerae strain SL6Y]
MIVSMDVIKRVYRYAEPNLSLVGWMGMLGFPAYYFIWEYWFPQDYENLGLRLAASALFAVLAFRDSLPKKWQCYLPYYYL
LTIGFCLPFFFSFMMLMNNWSTIWAMSFMASIFLHILLVHDTRVMAIQALSSIGLSYLVVYGIADSQPSTLIEWQFMPIF
LFTYVFGNLFFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKASIDVVRTMVPKPQAAAQGEYALDAQELDLLHQILN
EADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQPFDFFGSDTLLTYALFN
LLKNAFYYQKEHFSVRITIEQTSEQNLIRVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGTIRCAS
QQGQWTEFVLSFPRYDSDTVNEIKTELLKTKSLIYIGSNQAIVRELNHLAVDDEFGFTAISAQQAVRRQDYEFEFDLILL
DLDDATTQGELLPKLEGTLSFAEGCIGYVYDPGKTYAVNINRYLHIQPISIHSILRKPRKIIERLLFEQDSLSMNRNVIP
LQKSRHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRGSEHDY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWI

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=447581 HPY06_RS16420 WP_367889783.1 605102..607162(-) (cqsS) [Vibrio cholerae strain SL6Y]
GTGATAGTGAGCATGGATGTAATAAAGAGAGTGTATCGATATGCAGAACCTAATCTGTCCTTAGTTGGATGGATGGGGAT
GCTTGGCTTTCCTGCCTACTACTTTATTTGGGAATATTGGTTTCCACAGGACTATGAGAACCTAGGCTTACGCCTTGCTG
CCTCTGCGTTATTTGCAGTACTTGCATTTCGAGATTCTTTACCCAAAAAATGGCAGTGCTATTTGCCATACTATTATTTG
TTGACGATAGGTTTCTGCTTGCCTTTCTTCTTCTCTTTTATGATGTTGATGAATAACTGGTCAACAATTTGGGCGATGTC
GTTCATGGCGTCCATTTTCTTGCATATTCTCCTAGTACACGATACCAGAGTGATGGCGATACAAGCGTTGTCCTCTATTG
GATTATCCTACCTCGTTGTGTACGGTATAGCCGATTCTCAACCATCGACGTTGATCGAATGGCAATTTATGCCGATATTT
TTATTCACGTATGTGTTTGGGAATCTGTTCTTTTTTCGTAACCAGATCTCTCATGAAACCAAAGTATCGATTGCCAAAAC
GTTTGGTGCAGGGATTGCCCACGAAATGCGTAATCCACTCAGTGCCTTGAAAGCGTCGATTGATGTTGTGCGAACCATGG
TCCCCAAGCCGCAAGCAGCCGCTCAGGGAGAGTATGCTTTGGATGCGCAAGAGCTGGATCTACTGCATCAAATTTTGAAT
GAAGCTGATGATGTCATTTACTCTGGCAATAACGCGATTGATTTGCTGCTCACCTCGATTGATGAAAACCGCGTTTCGCC
GGCGAGTTTTAAAAAACACTCAGTAGTGGATGTGATTGAAAAAGCGGTGAAAACCTTCCCGTATAAAAATGCAGCGGATC
AGCACTCGGTAGAGCTTGAAGTGCATCAGCCGTTTGACTTTTTTGGCAGTGATACTCTACTGACCTATGCGTTATTTAAC
CTGTTGAAAAATGCCTTCTATTATCAAAAAGAGCATTTTTCAGTTCGTATTACCATTGAACAAACCAGTGAGCAGAACCT
TATCCGAGTCCGTGATAACGGCGTGGGGATTGCGCCAGAGATGTTGGAAGACATTTTCCGTGATTTCTATACCTTCGGTA
AAAATGGCAGCTATGGGCTAGGATTGCCATTTTGCCGCAAAGTGATGACCGCATTTGGAGGGACGATTCGCTGTGCGTCT
CAACAAGGTCAGTGGACAGAATTCGTATTGAGCTTTCCTCGTTACGATTCCGATACGGTTAACGAGATAAAAACAGAACT
GCTGAAAACCAAATCGCTCATTTATATCGGCTCAAATCAAGCTATCGTTCGAGAGTTAAATCATCTCGCGGTGGACGATG
AGTTTGGCTTTACTGCCATTTCTGCACAGCAAGCAGTAAGACGCCAAGATTATGAGTTTGAGTTCGACCTTATTTTGCTC
GACCTTGATGACGCCACTACGCAGGGAGAACTACTGCCGAAACTTGAAGGTACATTGAGTTTTGCAGAAGGCTGTATCGG
CTATGTGTATGACCCGGGTAAAACGTACGCGGTAAACATTAACCGTTATCTGCACATTCAGCCGATCAGTATTCACTCTA
TTCTCAGAAAGCCGCGGAAAATCATCGAGCGCTTGTTGTTCGAGCAAGATTCTTTATCGATGAATCGTAATGTGATCCCC
TTGCAAAAGAGTCGACATGAACGGCGTATTTTGGTGGTTGACGATAATCAATCGATCCGAACTTTTACGGCTATTTTGCT
TGAGCAACAAGGTTATGAAGTGGTGCAAGCCAACGATGGTAGTGAAGTGCTCAAGCATATGGAGAGTCAAAACATCGATT
TAGTGTTGATGGACATTGAAATGCCGAATGTTGGGGGATTAGAAGCGACGCGTTTAATTCGTGGCTCTGAGCATGATTAC
AAAAATATTCCGATCATTGGTTACACCGGTGATAACAGCCCCAAAACCTTGGCTCTGGTACAAACCTCTGGCATGAATGA
TTTCATTGTGAAGCCTGCTGACCGTGATGTATTGCTAAATAAAGTGGCAGCTTGGATATGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-413)

Response regulator receiver domain (Response_reg)

(570-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

92.711

100

0.927