Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   HPY06_RS16415 Genome accession   NZ_CP053805
Coordinates   603848..605017 (+) Length   389 a.a.
NCBI ID   WP_001039903.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL6Y     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 598848..610017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY06_RS16400 (HPY06_16470) - 599680..600669 (-) 990 WP_033927936.1 GTP-binding protein -
  HPY06_RS16405 (HPY06_16475) clcA 601136..602542 (+) 1407 WP_000107452.1 H(+)/Cl(-) exchange transporter ClcA -
  HPY06_RS16410 (HPY06_16480) - 602689..603651 (+) 963 WP_001104009.1 TDT family transporter -
  HPY06_RS16415 (HPY06_16485) cqsA 603848..605017 (+) 1170 WP_001039903.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HPY06_RS16420 (HPY06_16490) cqsS 605102..607162 (-) 2061 WP_367889783.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43744.04 Da        Isoelectric Point: 6.8058

>NTDB_id=447580 HPY06_RS16415 WP_001039903.1 603848..605017(+) (cqsA) [Vibrio cholerae strain SL6Y]
MNKPQLPDFIQDKIDHFIENFIAINKNGKHLVLGKHASSEDIILQSNDYLSLANHPLIKAHLAKSLLEEHQSLFMSAIFL
QSDYDKPPIESRLAKFTGFKECLLSQSGWCANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAKIHPFMHNNCDHLRT
LIQRYGPGIIAVDSIYSTIGTLAPLTELVRISQEYGCALLVDESHSLGTHGPKGSGLLAELNLTAEVHFMTASLAKTFSY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLESTLEIIECSDDKRKKLERMSRKLRIGLTQLGLTIRSESQIISL
ETGDERNTEKVRDFLESNGLFGSVFCRPATTKNKNIIRFSLNSDVTDEQITRIIEICSDAVKRSDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=447580 HPY06_RS16415 WP_001039903.1 603848..605017(+) (cqsA) [Vibrio cholerae strain SL6Y]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGGACAAAATCGACCACTTTATTGAAAACTTTATTGCCATAAACAAAAA
TGGAAAACATTTAGTGCTGGGTAAGCATGCCAGCAGTGAGGATATTATTTTACAAAGCAATGATTATCTCTCCTTGGCTA
ATCATCCATTGATTAAAGCTCACTTAGCAAAGTCATTACTAGAAGAACATCAAAGCCTGTTTATGTCAGCGATCTTTTTA
CAAAGTGATTATGACAAACCACCAATCGAAAGCCGACTGGCTAAATTCACAGGTTTCAAAGAATGTCTGTTATCCCAATC
GGGCTGGTGCGCTAACGTGGGCCTTTTACAGACAATTTGCCAACCGAATACCAATGTATACATCGATTTCTTTGCTCACA
TGTCACTGTGGGAAGGAGCACGTTATGCGAATGCAAAAATACACCCTTTTATGCATAACAACTGCGATCATTTACGCACA
TTAATTCAACGTTACGGCCCTGGAATTATAGCTGTTGACTCCATCTATAGCACAATAGGAACTCTGGCACCGTTAACAGA
ATTAGTCAGAATCAGTCAGGAGTACGGTTGTGCTTTGTTAGTGGATGAATCTCATTCTCTAGGCACGCATGGTCCGAAAG
GTTCTGGTTTACTCGCGGAGTTGAATCTCACTGCTGAGGTGCATTTTATGACTGCCAGTTTAGCCAAAACGTTTTCCTAT
CGAGCTGGAGCCATTTGGTGCAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCGGCTATTTTTAGCTCTAC
TTTGCTGCCCTATGAAGCAGCTGGATTGGAAAGTACATTGGAAATTATTGAATGTTCAGATGACAAACGAAAAAAACTAG
AACGTATGTCGAGAAAATTACGTATTGGATTAACCCAACTTGGCTTAACCATCCGCAGTGAAAGCCAGATTATCAGCCTA
GAAACTGGAGATGAAAGAAATACCGAAAAAGTGCGTGACTTCCTAGAGAGTAATGGATTATTTGGGTCAGTATTTTGTAG
GCCGGCCACCACAAAAAATAAAAACATTATTCGTTTCTCACTTAATAGTGATGTGACCGATGAACAGATAACGAGAATAA
TTGAGATCTGTTCTGATGCAGTGAAGCGCAGTGATTTTTACTTTCGCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(42-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

85.861

100

0.859