Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   HPY06_RS08925 Genome accession   NZ_CP053804
Coordinates   1982367..1983734 (-) Length   455 a.a.
NCBI ID   WP_001888250.1    Uniprot ID   Q9KT84
Organism   Vibrio cholerae strain SL6Y     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1977367..1988734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY06_RS08890 (HPY06_08895) moaE 1978090..1978542 (-) 453 WP_000350081.1 molybdopterin synthase catalytic subunit MoaE -
  HPY06_RS08895 (HPY06_08900) moaD 1978544..1978789 (-) 246 WP_000598589.1 molybdopterin synthase sulfur carrier subunit -
  HPY06_RS08900 (HPY06_08905) moaC 1978786..1979265 (-) 480 WP_000080913.1 cyclic pyranopterin monophosphate synthase MoaC -
  HPY06_RS08905 (HPY06_08910) moaB 1979276..1979788 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  HPY06_RS08910 (HPY06_08915) moaA 1979848..1980837 (-) 990 WP_000068560.1 GTP 3',8-cyclase MoaA -
  HPY06_RS08915 (HPY06_08920) - 1981143..1982033 (+) 891 WP_000061070.1 YvcK family protein -
  HPY06_RS08920 (HPY06_08925) luxU 1982022..1982363 (-) 342 WP_175230611.1 quorum-sensing phosphorelay protein LuxU -
  HPY06_RS08925 (HPY06_08930) luxO 1982367..1983734 (-) 1368 WP_001888250.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  HPY06_RS08930 (HPY06_08935) uvrB 1984164..1986194 (-) 2031 WP_001914672.1 excinuclease ABC subunit UvrB -
  HPY06_RS08940 (HPY06_08945) rsxA 1987075..1987656 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  HPY06_RS08945 (HPY06_08950) rsxB 1987656..1988243 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50839.12 Da        Isoelectric Point: 5.5755

>NTDB_id=447561 HPY06_RS08925 WP_001888250.1 1982367..1983734(-) (luxO) [Vibrio cholerae strain SL6Y]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=447561 HPY06_RS08925 WP_001888250.1 1982367..1983734(-) (luxO) [Vibrio cholerae strain SL6Y]
ATGGTAGAAGACACGGCATCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGTCGTCGCGAGCCGGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACCGGTAAAGAAGTGTGCGCGGAGGCGATTCATGCCGCGAGCAAGCGCGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTTAAAGGGGCTTTTACCGGAGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTGCTGCGCTTCATCCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCGACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGGCGTTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGCGGTGATGATGTGATCGAGATTGCTTACTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGTCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTCGTGCTCAATGAAGGTCGTGAAATCACCTTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTATGGATGACCGAAAAACAAGCCATTGAACAAGCCATAGAAGCGTGTGATGGTAACATTCCCCGCGCCGC
GACCTATCTGGATGTCAGTCCATCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

100

100

1
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38