Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ST90728_RS00215 Genome accession   NZ_CP065479
Coordinates   30454..31227 (+) Length   257 a.a.
NCBI ID   WP_065972746.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90728     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25454..36227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS00195 (ST90728_00195) - 25525..27006 (+) 1482 WP_347114177.1 CHAP domain-containing protein -
  ST90728_RS00200 (ST90728_00200) - 27220..28185 (+) 966 WP_002948994.1 ribose-phosphate diphosphokinase -
  ST90728_RS00205 (ST90728_00205) - 28234..29080 (-) 847 Protein_19 transposase -
  ST90728_RS00210 (ST90728_00210) - 29292..30467 (+) 1176 WP_347114181.1 pyridoxal phosphate-dependent aminotransferase -
  ST90728_RS00215 (ST90728_00215) recO 30454..31227 (+) 774 WP_065972746.1 DNA repair protein RecO Machinery gene
  ST90728_RS00220 (ST90728_00220) plsX 31443..32447 (+) 1005 WP_347114184.1 phosphate acyltransferase PlsX -
  ST90728_RS00225 (ST90728_00225) - 32447..32692 (+) 246 WP_002949008.1 phosphopantetheine-binding protein -
  ST90728_RS00230 (ST90728_00230) purC 32977..33684 (+) 708 WP_179974118.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29782.01 Da        Isoelectric Point: 5.0766

>NTDB_id=447537 ST90728_RS00215 WP_065972746.1 30454..31227(+) (recO) [Streptococcus thermophilus strain 90728]
MQKLESRGVILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAIADGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDNAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=447537 ST90728_RS00215 WP_065972746.1 30454..31227(+) (recO) [Streptococcus thermophilus strain 90728]
ATGCAGAAGCTTGAGAGTAGGGGGGTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTGCTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCATTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAATGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607