Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   HPY16_RS16935 Genome accession   NZ_CP053803
Coordinates   788101..789195 (-) Length   364 a.a.
NCBI ID   WP_113628575.1    Uniprot ID   -
Organism   Vibrio cholerae strain L6G     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 783101..794195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY16_RS16925 (HPY16_16985) - 784853..785518 (+) 666 WP_000268201.1 flagellar brake protein -
  HPY16_RS16930 (HPY16_16990) luxQ 785510..788083 (-) 2574 WP_175248526.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  HPY16_RS16935 (HPY16_16995) luxP 788101..789195 (-) 1095 WP_113628575.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  HPY16_RS16940 (HPY16_17000) traF 789407..790567 (-) 1161 WP_175248527.1 conjugal transfer protein TraF -
  HPY16_RS16945 (HPY16_17005) - 790669..790974 (-) 306 WP_088127772.1 GIY-YIG nuclease family protein -
  HPY16_RS16950 (HPY16_17010) - 790974..791624 (-) 651 WP_175248528.1 YceH family protein -
  HPY16_RS16955 (HPY16_17015) - 791666..791863 (-) 198 WP_001246073.1 hypothetical protein -
  HPY16_RS16960 (HPY16_17020) - 792051..792371 (+) 321 WP_001089529.1 DUF496 family protein -
  HPY16_RS16965 (HPY16_17025) - 792784..793035 (+) 252 WP_001882582.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41348.04 Da        Isoelectric Point: 6.5074

>NTDB_id=447537 HPY16_RS16935 WP_113628575.1 788101..789195(-) (luxP) [Vibrio cholerae strain L6G]
MKRKLIFPLFLMAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQKQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNEAHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKTVPLVYSGDFEIVTKQDSAARVTELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=447537 HPY16_RS16935 WP_113628575.1 788101..789195(-) (luxP) [Vibrio cholerae strain L6G]
ATGAAAAGAAAGCTAATATTCCCGCTGTTTCTGATGGCAGCACTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAAAACAACCCGTCATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAATATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCAAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGATTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGCGCGCAATTATT
GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGACACCTTCATTCAAGATATGAACGAGGCGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAG
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
GGCTTTGGGAGCTGCGCAGGCACTGAAAGAACTGAATCGACAAGATATTCTCGTCAATGGTTGGGGAGGCGGCTCGGCTG
AGCTGGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGCATGAATGACGATACCGGCGTTGCCATGGCTGAA
GCGATAAAATGGGATTTAGAAGGAAAAACCGTACCTTTGGTGTATTCGGGCGATTTTGAAATTGTTACCAAGCAAGATTC
CGCTGCACGTGTTACAGAGCTGAAAGCCCGGGCTTTCCGTTATTCAGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

97.527

100

0.975