Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   HPY15_RS09020 Genome accession   NZ_CP053800
Coordinates   1996924..1998291 (-) Length   455 a.a.
NCBI ID   WP_001888250.1    Uniprot ID   Q9KT84
Organism   Vibrio cholerae strain SO5Y     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1991924..2003291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY15_RS08985 (HPY15_09000) moaE 1992637..1993098 (-) 462 WP_000350082.1 molybdopterin synthase catalytic subunit MoaE -
  HPY15_RS08990 (HPY15_09005) moaD 1993100..1993345 (-) 246 WP_000598587.1 molybdopterin synthase sulfur carrier subunit -
  HPY15_RS08995 (HPY15_09010) moaC 1993342..1993821 (-) 480 WP_000080906.1 cyclic pyranopterin monophosphate synthase MoaC -
  HPY15_RS09000 (HPY15_09015) moaB 1993832..1994344 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  HPY15_RS09005 (HPY15_09020) moaA 1994404..1995393 (-) 990 WP_046126566.1 GTP 3',8-cyclase MoaA -
  HPY15_RS09010 (HPY15_09025) - 1995700..1996590 (+) 891 WP_000061070.1 YvcK family protein -
  HPY15_RS09015 (HPY15_09030) luxU 1996579..1996920 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  HPY15_RS09020 (HPY15_09035) luxO 1996924..1998291 (-) 1368 WP_001888250.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  HPY15_RS09025 (HPY15_09040) uvrB 1998722..2000752 (-) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  HPY15_RS09035 (HPY15_09050) rsxA 2001634..2002215 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  HPY15_RS09040 (HPY15_09055) rsxB 2002215..2002802 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50839.12 Da        Isoelectric Point: 5.5755

>NTDB_id=447468 HPY15_RS09020 WP_001888250.1 1996924..1998291(-) (luxO) [Vibrio cholerae strain SO5Y]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=447468 HPY15_RS09020 WP_001888250.1 1996924..1998291(-) (luxO) [Vibrio cholerae strain SO5Y]
ATGGTAGAAGACACGGCATCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCGCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGAGTCAC
TGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACCGGTAAAGAAGTGTGCGCGGAGGCGATTCATGCCGCGAGCAAGCGCGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTTAAAGGGGCTTTTACCGGAGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTGCTGCGCTTCATCCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCGACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGGCGTTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGCGGTGATGATGTGATCGAGATTGCTTACTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGTCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTCTGCGCAACGTGGTCGTGCTCAATGAAGGTCGTGAAATCACCTTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTATGGATGACCGAAAAACAAGCCATTGAACAAGCCATAGAAGCGTGTGATGGTAACATTCCCCGCGCCGC
GACCTATCTGGATGTCAGTCCATCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

100

100

1
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38