Detailed information NTG0447432

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: ST4078_RS09565
• Genome accession: NZ_CP065477
• Coordinates: 1824013..1825113 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus strain 4078
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1819013..1830113

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST4078_RS09540 (ST4078_09525)	pgsA	1819555..1820097 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
ST4078_RS09545 (ST4078_09530)	-	1820110..1820967 (-)	858	WP_014608803.1	helix-turn-helix domain-containing protein	-
ST4078_RS09550 (ST4078_09535)	yfmH	1821026..1822303 (-)	1278	WP_011226704.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
ST4078_RS09555 (ST4078_09540)	yfmF	1822305..1823555 (-)	1251	WP_011681762.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
ST4078_RS09560 (ST4078_09545)	yaaA	1823633..1824010 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
ST4078_RS09565 (ST4078_09550)	recF	1824013..1825113 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
ST4078_RS09570 (ST4078_09555)	guaB	1825282..1826763 (-)	1482	WP_014608806.1	IMP dehydrogenase	-
ST4078_RS09575 (ST4078_09560)	trpS	1826940..1827962 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
ST4078_RS09580 (ST4078_09565)	-	1828390..1829262 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=447432 ST4078_RS09565 WP_002947786.1 1824013..1825113(+) (recF) [Streptococcus thermophilus strain 4078]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=447432 ST4078_RS09565 WP_002947786.1 1824013..1825113(+) (recF) [Streptococcus thermophilus strain 4078]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432