NTDB

Overview

Name	recF	Type	Machinery gene
Locus tag	ST4052_RS09230	Genome accession	NZ_CP065476
Coordinates	1769092..1770192 (+)	Length	366 a.a.
NCBI ID	WP_011226706.1	Uniprot ID	Q5M237
Organism	Streptococcus thermophilus strain 4052
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1764092..1775192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST4052_RS09205 (ST4052_09315)	pgsA	1764634..1765176 (-)	543	WP_002947777.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
ST4052_RS09210 (ST4052_09320)	-	1765189..1766046 (-)	858	WP_011226703.1	helix-turn-helix domain-containing protein	-
ST4052_RS09215 (ST4052_09325)	-	1766105..1767382 (-)	1278	WP_011226704.1	pitrilysin family protein	-
ST4052_RS09220 (ST4052_09330)	-	1767384..1768634 (-)	1251	WP_011681762.1	pitrilysin family protein	-
ST4052_RS09225 (ST4052_09335)	yaaA	1768712..1769089 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
ST4052_RS09230 (ST4052_09340)	recF	1769092..1770192 (+)	1101	WP_011226706.1	DNA replication/repair protein RecF	Machinery gene
ST4052_RS09235 (ST4052_09345)	guaB	1770361..1771842 (-)	1482	WP_014608806.1	IMP dehydrogenase	-
ST4052_RS09240 (ST4052_09350)	trpS	1772019..1773041 (-)	1023	WP_002952292.1	tryptophan--tRNA ligase	-
ST4052_RS09245 (ST4052_09355)	-	1773469..1774341 (+)	873	WP_011227628.1	YitT family protein	-

Sequence

Protein

Download Length: 366 a.a. Molecular weight: 42185.34 Da Isoelectric Point: 8.3913

                                >NTDB_id=447329 ST4052_RS09230 WP_011226706.1 1769092..1770192(+) (recF) [Streptococcus thermophilus strain 4052]

MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN

LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR

NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT

ILNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ

LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

Download Length: 1101 bp

                                >NTDB_id=447329 ST4052_RS09230 WP_011226706.1 1769092..1770192(+) (recF) [Streptococcus thermophilus strain 4052]

ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT

TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCTTTAACACGTAGTCATCGGA

CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC

CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA

TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT

TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT

AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC

ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC

AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT

ATATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA

CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG

CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA

CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC

ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q5M237

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432

Detailed information NTG0447329