Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   GE022_RS10520 Genome accession   NZ_CP053790
Coordinates   57886..57987 (+) Length   33 a.a.
NCBI ID   WP_217267493.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 52886..62987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS00355 (GE022_000355) purE 53392..53883 (+) 492 WP_003046002.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GE022_RS00360 (GE022_000360) purK 53870..54940 (+) 1071 WP_164405430.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GE022_RS00365 (GE022_000365) purB 55459..56751 (+) 1293 WP_164228814.1 adenylosuccinate lyase -
  GE022_RS00370 (GE022_000370) comR 56888..57799 (+) 912 WP_003046007.1 helix-turn-helix domain-containing protein Regulator
  GE022_RS10520 comS 57886..57987 (+) 102 WP_217267493.1 quorum-sensing system DWW-type pheromone Regulator
  GE022_RS00375 (GE022_000375) ruvB 58020..59018 (+) 999 WP_164405431.1 Holliday junction branch migration DNA helicase RuvB -
  GE022_RS00380 (GE022_000380) - 59159..59602 (+) 444 WP_093999215.1 low molecular weight protein-tyrosine-phosphatase -
  GE022_RS00385 (GE022_000385) - 59619..60020 (+) 402 WP_003046016.1 MORN repeat-containing protein -
  GE022_RS00390 (GE022_000390) - 60017..61792 (+) 1776 WP_164405432.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 33 a.a.        Molecular weight: 3962.88 Da        Isoelectric Point: 10.7919

>NTDB_id=447243 GE022_RS10520 WP_217267493.1 57886..57987(+) (comS) [Streptococcus canis strain HL_77_2]
MMFKKFKPFLLLAAVIAFKVARVMNEFDWWNLG

Nucleotide


Download         Length: 102 bp        

>NTDB_id=447243 GE022_RS10520 WP_217267493.1 57886..57987(+) (comS) [Streptococcus canis strain HL_77_2]
ATGATGTTTAAAAAATTCAAACCATTTTTGTTATTAGCTGCGGTAATTGCTTTTAAAGTAGCTCGTGTGATGAATGAATT
TGATTGGTGGAATCTAGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

87.5

96.97

0.848
  comS Streptococcus pyogenes MGAS8232

41.935

93.939

0.394