Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   GE022_RS05520 Genome accession   NZ_CP053790
Coordinates   1130115..1131344 (-) Length   409 a.a.
NCBI ID   WP_003048166.1    Uniprot ID   A0AAE4Q739
Organism   Streptococcus canis strain HL_77_2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1125115..1136344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS10990 - 1125889..1126520 (+) 632 Protein_1037 IS30 family transposase -
  GE022_RS05500 (GE022_005490) - 1126555..1127376 (+) 822 WP_244951823.1 IS982 family transposase -
  GE022_RS05505 (GE022_005495) - 1127522..1128487 (+) 966 Protein_1039 IS30 family transposase -
  GE022_RS05510 (GE022_005500) - 1128616..1129356 (-) 741 WP_164228677.1 hypothetical protein -
  GE022_RS05515 (GE022_005505) yihA 1129506..1130105 (-) 600 WP_141290794.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  GE022_RS05520 (GE022_005510) clpX 1130115..1131344 (-) 1230 WP_003048166.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GE022_RS05525 (GE022_005515) - 1131502..1131672 (-) 171 WP_003048164.1 hypothetical protein -
  GE022_RS05530 (GE022_005520) - 1131692..1132189 (-) 498 WP_003048161.1 dihydrofolate reductase -
  GE022_RS05535 (GE022_005525) - 1132269..1133108 (-) 840 WP_003048159.1 thymidylate synthase -
  GE022_RS05540 (GE022_005530) - 1133316..1134497 (+) 1182 WP_164228681.1 hydroxymethylglutaryl-CoA synthase -
  GE022_RS05545 (GE022_005535) - 1134478..1135752 (+) 1275 WP_164405675.1 hydroxymethylglutaryl-CoA reductase, degradative -
  GE022_RS10995 (GE022_005540) - 1135850..1136104 (-) 255 WP_099983065.1 IS3 family transposase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44970.51 Da        Isoelectric Point: 4.6207

>NTDB_id=447214 GE022_RS05520 WP_003048166.1 1130115..1131344(-) (clpX) [Streptococcus canis strain HL_77_2]
MAGNRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLNILNQYVVGQDR
AKRALAVAVYNHYKRVSFAESRDDEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQI
LTEPRNALVKQYQALLSYDGVELEFEKGALEAIASKAIERKTGARGLRSIIEETMLDIMFEVPSQEDVTKVRITKAAVEG
KAKPVLETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=447214 GE022_RS05520 WP_003048166.1 1130115..1131344(-) (clpX) [Streptococcus canis strain HL_77_2]
ATGGCAGGAAATCGTACTAACGATATTAAGGTATATTGTTCATTTTGTGGCAAAAGCCAAGATGAAGTCAAAAAAATCAT
TGCAGGGAACAACGTTTTTATTTGTAATGAATGTGTAGCCCTATCACAAGAAATTATCAAAGAAGAATTGGCAGAAGAAG
TACTGGCTGATTTAACAGAAGTTCCAAAACCAAAAGAACTTCTTAATATTTTAAACCAATACGTGGTTGGTCAAGACCGT
GCCAAACGAGCCTTAGCAGTTGCAGTCTATAATCATTACAAGCGTGTTTCATTTGCTGAAAGCCGTGATGACGAAGATGT
TGATTTGCAAAAATCAAATATTTTAATGATTGGCCCAACAGGCTCTGGAAAGACGTTTTTGGCACAGACATTGGCTAAGA
GTTTAAATGTGCCTTTTGCTATTGCAGATGCTACCTCCTTAACAGAAGCTGGATATGTGGGAGAGGACGTTGAAAATATC
CTTCTCAAACTGATTCAAGCAGCGGATTATAATGTGGAGCGAGCAGAGCGTGGCATCATTTATGTTGATGAAATTGATAA
GATTGCTAAAAAAGGTGAGAATGTGTCCATCACACGAGATGTGTCAGGCGAGGGAGTACAACAGGCTCTGTTAAAAATTA
TTGAAGGTACTGTTGCGAGTGTTCCTCCTCAAGGTGGGCGAAAGCACCCTAATCAGGAAATGATTCAAATTGATACAAAA
AATATCTTATTCATTGTTGGTGGGGCATTTGATGGCATTGAGGAGATTGTTAAACAGCGTCTAGGGGAAAAAATCATTGG
TTTTGGTCAAAACAGCCGTAAAATTGATGATAATGCTTCTTACATGCAAGAAATTATATCAGAAGATATCCAAAAATTTG
GTCTTATTCCTGAATTTATTGGCCGTTTACCAGTTGTGGCAGCCCTTGAACAACTTAACACCTCAGACTTGATCCAAATA
TTAACAGAGCCAAGAAATGCTCTTGTTAAACAATACCAAGCCTTGTTATCCTATGATGGTGTTGAATTAGAATTTGAGAA
GGGTGCCCTTGAAGCCATTGCAAGTAAAGCGATTGAACGCAAAACAGGAGCACGTGGTCTCCGTTCTATCATTGAAGAAA
CCATGTTGGACATTATGTTTGAAGTGCCAAGTCAAGAAGATGTGACTAAAGTTCGTATCACCAAGGCTGCAGTTGAAGGT
AAGGCAAAACCCGTTTTAGAAACAGCATAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.487

100

0.895
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.853

98.044

0.577