Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   GE023_RS10745 Genome accession   NZ_CP053789
Coordinates   56286..56387 (+) Length   33 a.a.
NCBI ID   WP_201281440.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_98_2     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 51286..61387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS00325 (GE023_000325) purE 51793..52284 (+) 492 WP_159305220.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GE023_RS00330 (GE023_000330) purK 52271..53341 (+) 1071 WP_159305219.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GE023_RS00335 (GE023_000335) purB 53859..55151 (+) 1293 WP_003046005.1 adenylosuccinate lyase -
  GE023_RS00340 (GE023_000340) comR 55288..56199 (+) 912 WP_003046007.1 helix-turn-helix domain-containing protein Regulator
  GE023_RS10745 comS 56286..56387 (+) 102 WP_201281440.1 quorum-sensing system DWW-type pheromone Regulator
  GE023_RS00345 (GE023_000345) ruvB 56420..57418 (+) 999 WP_003046011.1 Holliday junction branch migration DNA helicase RuvB -
  GE023_RS00350 (GE023_000350) - 57559..58002 (+) 444 WP_159305976.1 low molecular weight protein-tyrosine-phosphatase -
  GE023_RS00355 (GE023_000355) - 58019..58420 (+) 402 WP_003046016.1 MORN repeat-containing protein -
  GE023_RS00360 (GE023_000360) - 58417..60192 (+) 1776 WP_159305977.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 33 a.a.        Molecular weight: 3962.88 Da        Isoelectric Point: 10.7919

>NTDB_id=447189 GE023_RS10745 WP_201281440.1 56286..56387(+) (comS) [Streptococcus canis strain HL_98_2]
MMFKKFKPFLLIAAVIAFKVARVMNEFDWWNLG

Nucleotide


Download         Length: 102 bp        

>NTDB_id=447189 GE023_RS10745 WP_201281440.1 56286..56387(+) (comS) [Streptococcus canis strain HL_98_2]
ATGATGTTTAAAAAATTCAAACCATTTTTGTTAATAGCTGCGGTAATTGCTTTTAAAGTAGCTCGTGTGATGAATGAATT
TGATTGGTGGAATCTAGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

84.375

96.97

0.818
  comS Streptococcus pyogenes MGAS8232

41.935

93.939

0.394