Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MARHY_RS03365 Genome accession   NC_017067
Coordinates   733434..735548 (+) Length   704 a.a.
NCBI ID   WP_014420572.1    Uniprot ID   -
Organism   Marinobacter nauticus ATCC 49840     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 728434..740548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MARHY_RS03345 (MARHY0697) pilM 730636..731700 (+) 1065 WP_011784345.1 pilus assembly protein PilM Machinery gene
  MARHY_RS03350 (MARHY0698) - 731700..732263 (+) 564 WP_014420569.1 PilN domain-containing protein -
  MARHY_RS03355 (MARHY0699) - 732263..732874 (+) 612 WP_014420570.1 type 4a pilus biogenesis protein PilO -
  MARHY_RS03360 (MARHY0700) - 732877..733419 (+) 543 WP_023007639.1 pilus assembly protein PilP -
  MARHY_RS03365 (MARHY0701) pilQ 733434..735548 (+) 2115 WP_014420572.1 type IV pilus secretin PilQ family protein Machinery gene
  MARHY_RS03370 (MARHY0702) aroK 735687..736277 (+) 591 WP_014420573.1 shikimate kinase AroK -
  MARHY_RS03375 (MARHY0703) aroB 736246..737343 (+) 1098 WP_011784350.1 3-dehydroquinate synthase -
  MARHY_RS03380 (MARHY0704) - 737375..738925 (+) 1551 WP_014420574.1 AAA family ATPase -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 75945.33 Da        Isoelectric Point: 4.3676

>NTDB_id=44698 MARHY_RS03365 WP_014420572.1 733434..735548(+) (pilQ) [Marinobacter nauticus ATCC 49840]
MNSRNMHEQTGLGSRLAMFKKLNVCVGVIAIGLWSGLASAVTLQDLSFSSLPGERLEVTMQFDGTPPEPSGYTIERPARI
AVDLKDTTSALNQRSIPLGTGNAQSVTVVETKDRTRLIFNLVELVPHDTVRTNNSLVMTIGGESDAVASTSSQPAQRTTT
ASPASSNALAGVDFRRGKEGEGRVIVDLGSSTATVNLNELGGRIRLTMPDLQVPADLRRRLDVTDFATPVTRIDTFVEDG
SAVVEIRPQGEYDYIAYQSGREFTVSIEELSREEAEARREEKFPYTGDKLSLNFQDIEVRSVLQLIADFTGLNLVASDTV
GGSITLRLQNVPWDQALDLILKTKGLDKRQIGNVLLVAPAEEIAAREKLELETNKQIAELAPVRLDIIQVNYAKAADIVE
LIQADEELISSRGFVSSDARTNTISVRETAEKLDEIRRLVSTWDVPVRQVSIEARIVRAQTNVAEDLGVRWGGAAYNVDG
DDVVTVGGSLGTLQEARDAASGGSNTISFPGALGVDLGVSGEGASSFAIGWGSDDFLVDLELSALESDGRAEVVSQPRVV
TADRQSASIKSGEEIPYQEASSSGATSVSFKEAVLSLEVTPQITPDDKIIMDLVVNQDSRGEVTAGIPSINTNEVTTQVL
VANGETVVLGGIFQSEVATQTTKTPFLGDIPYLGRLFKRTEHVDERSELLIFITPKIIKNDILQ

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=44698 MARHY_RS03365 WP_014420572.1 733434..735548(+) (pilQ) [Marinobacter nauticus ATCC 49840]
ATGAATTCAAGAAACATGCACGAACAAACAGGTTTAGGGTCGAGGCTAGCGATGTTCAAAAAACTCAATGTCTGCGTAGG
CGTGATTGCCATCGGGTTATGGAGCGGCCTGGCCAGCGCGGTCACGCTGCAGGACTTGTCGTTTTCGTCGCTGCCAGGGG
AGCGGCTGGAAGTCACCATGCAGTTTGATGGCACGCCGCCCGAACCTTCGGGCTATACCATAGAGCGGCCTGCCCGGATT
GCGGTGGATCTTAAAGACACCACCAGTGCCTTGAACCAGCGCAGTATCCCGCTGGGTACCGGTAATGCTCAGAGCGTTAC
CGTGGTCGAAACCAAGGATCGCACCCGGTTGATCTTTAATCTGGTTGAGTTGGTGCCTCACGACACCGTACGCACCAACA
ACTCTCTGGTAATGACCATTGGTGGTGAGTCCGATGCCGTCGCCTCCACCTCTTCTCAGCCAGCACAGCGTACGACAACG
GCTTCTCCTGCATCGTCGAATGCGTTGGCCGGTGTTGATTTCCGTCGTGGTAAAGAGGGCGAAGGTCGGGTGATCGTCGA
TCTGGGTAGCAGCACGGCGACCGTCAATCTGAACGAGCTGGGCGGCCGTATCCGTCTGACCATGCCTGACCTTCAGGTTC
CTGCCGATCTGAGACGTCGGCTGGATGTCACCGATTTTGCGACACCGGTTACTCGCATCGATACTTTTGTGGAAGATGGC
AGTGCGGTAGTCGAGATCAGACCACAGGGTGAATATGACTATATTGCCTATCAGTCAGGTCGTGAGTTTACCGTAAGCAT
TGAAGAGCTCTCGCGTGAAGAGGCCGAGGCACGCCGTGAGGAGAAATTCCCATACACCGGCGACAAGCTTTCCCTGAATT
TCCAGGACATTGAAGTGCGTTCGGTGCTTCAGCTGATTGCTGATTTTACCGGGCTTAACCTGGTCGCCAGTGACACAGTG
GGTGGAAGCATCACTCTGCGACTGCAGAACGTGCCATGGGATCAGGCGCTGGATCTGATCTTGAAGACCAAAGGCCTGGA
TAAGCGTCAGATCGGCAACGTCCTGTTGGTCGCGCCTGCCGAAGAAATTGCGGCCAGGGAAAAGCTTGAGCTCGAGACCA
ACAAGCAAATTGCGGAGTTGGCTCCGGTTCGGTTGGATATTATTCAGGTGAATTACGCCAAGGCGGCTGACATTGTTGAG
CTGATCCAGGCGGACGAAGAGCTCATTTCTTCCAGAGGCTTTGTTTCATCTGATGCCCGTACCAACACAATCAGTGTCCG
GGAAACTGCTGAGAAGCTCGATGAAATCCGTCGACTGGTATCGACATGGGACGTTCCTGTCCGTCAGGTTTCTATTGAAG
CGAGAATCGTCAGGGCTCAAACCAACGTGGCTGAAGATCTTGGCGTTCGTTGGGGTGGCGCGGCGTATAACGTAGACGGT
GATGATGTTGTCACGGTTGGCGGGTCTCTCGGTACTCTGCAAGAGGCTCGGGATGCGGCAAGCGGTGGAAGCAACACTAT
TTCCTTCCCGGGAGCATTGGGTGTAGATCTCGGTGTGAGTGGCGAGGGGGCCTCATCTTTTGCGATTGGTTGGGGTAGCG
ATGATTTCCTCGTCGATCTCGAGTTGTCAGCGCTTGAAAGTGATGGTCGTGCGGAAGTGGTGTCCCAGCCCAGAGTGGTG
ACTGCAGATCGCCAGAGCGCGTCGATCAAATCTGGTGAAGAGATCCCTTATCAGGAAGCGTCTTCCAGTGGTGCGACTTC
TGTATCGTTCAAGGAAGCGGTGCTTTCTCTTGAGGTGACCCCGCAGATTACGCCCGATGACAAAATCATTATGGATCTCG
TGGTCAACCAGGATTCCCGGGGCGAAGTAACCGCAGGTATCCCGTCTATCAATACTAATGAAGTGACAACACAAGTATTG
GTTGCTAACGGCGAGACGGTTGTCCTGGGTGGTATCTTCCAGTCTGAAGTTGCCACGCAGACCACAAAAACTCCGTTCCT
GGGTGACATCCCCTATCTCGGGCGTCTGTTCAAGCGCACCGAGCATGTTGATGAGCGCAGCGAGCTGTTGATCTTTATTA
CGCCGAAGATCATCAAGAACGATATCTTGCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(387-449)

Secretin and TonB N terminus short domain (STN)

(313-359)

Bacterial type II and III secretion system protein (Secretin)

(544-699)

AMIN domain (AMIN)

(56-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

48.818

100

0.499
  pilQ Acinetobacter baumannii D1279779

40.997

100

0.42
  pilQ Acinetobacter baumannii strain A118

40.997

100

0.42
  comQ Acinetobacter baylyi ADP1

41.608

100

0.419
  pilQ Legionella pneumophila strain ERS1305867

40.663

94.318

0.384
  pilQ Legionella pneumophila strain Lp02

40.512

94.318

0.382

Multiple sequence alignment