Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HPQ66_RS02000 Genome accession   NZ_CP053764
Coordinates   425919..426872 (+) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus velezensis strain B268     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420919..431872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPQ66_RS01975 (HPQ66_01975) - 420964..422397 (+) 1434 WP_172614447.1 HAMP domain-containing sensor histidine kinase -
  HPQ66_RS01980 (HPQ66_01980) rapC 422550..423698 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  HPQ66_RS01985 (HPQ66_01985) phrC 423682..423801 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  HPQ66_RS01990 (HPQ66_01990) - 423950..424045 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  HPQ66_RS01995 (HPQ66_01995) - 424140..425504 (-) 1365 WP_172614448.1 aspartate kinase -
  HPQ66_RS02000 (HPQ66_02000) ceuB 425919..426872 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  HPQ66_RS02005 (HPQ66_02005) - 426862..427809 (+) 948 WP_172614449.1 iron chelate uptake ABC transporter family permease subunit -
  HPQ66_RS02010 (HPQ66_02010) - 427803..428561 (+) 759 WP_172614450.1 ABC transporter ATP-binding protein -
  HPQ66_RS02015 (HPQ66_02015) - 428583..429527 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  HPQ66_RS02020 (HPQ66_02020) - 429569..430993 (-) 1425 WP_063636989.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=446959 HPQ66_RS02000 WP_003156332.1 425919..426872(+) (ceuB) [Bacillus velezensis strain B268]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=446959 HPQ66_RS02000 WP_003156332.1 425919..426872(+) (ceuB) [Bacillus velezensis strain B268]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATTTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTTTCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533