Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   HPQ66_RS01980 Genome accession   NZ_CP053764
Coordinates   422550..423698 (+) Length   382 a.a.
NCBI ID   WP_014304340.1    Uniprot ID   I2C1C2
Organism   Bacillus velezensis strain B268     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 417550..428698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPQ66_RS01960 (HPQ66_01960) - 417947..418630 (-) 684 WP_077721793.1 ABC transporter ATP-binding protein -
  HPQ66_RS01965 (HPQ66_01965) - 418645..420081 (-) 1437 WP_077721794.1 ABC transporter permease -
  HPQ66_RS01970 (HPQ66_01970) - 420294..420977 (+) 684 WP_014416901.1 response regulator transcription factor -
  HPQ66_RS01975 (HPQ66_01975) - 420964..422397 (+) 1434 WP_172614447.1 HAMP domain-containing sensor histidine kinase -
  HPQ66_RS01980 (HPQ66_01980) rapC 422550..423698 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  HPQ66_RS01985 (HPQ66_01985) phrC 423682..423801 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  HPQ66_RS01990 (HPQ66_01990) - 423950..424045 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  HPQ66_RS01995 (HPQ66_01995) - 424140..425504 (-) 1365 WP_172614448.1 aspartate kinase -
  HPQ66_RS02000 (HPQ66_02000) ceuB 425919..426872 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  HPQ66_RS02005 (HPQ66_02005) - 426862..427809 (+) 948 WP_172614449.1 iron chelate uptake ABC transporter family permease subunit -
  HPQ66_RS02010 (HPQ66_02010) - 427803..428561 (+) 759 WP_172614450.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45494.75 Da        Isoelectric Point: 4.9939

>NTDB_id=446957 HPQ66_RS01980 WP_014304340.1 422550..423698(+) (rapC) [Bacillus velezensis strain B268]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=446957 HPQ66_RS01980 WP_014304340.1 422550..423698(+) (rapC) [Bacillus velezensis strain B268]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGACGAGGAAACA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(223-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.199

100

0.822
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568