Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   HQN78_RS05255 Genome accession   NZ_CP053750
Coordinates   1091984..1092775 (+) Length   263 a.a.
NCBI ID   WP_107798797.1    Uniprot ID   A0A2T5NGN2
Organism   Chromobacterium sp. Beijing     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1086984..1097775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN78_RS05245 (HQN78_05160) pgeF 1090137..1090892 (-) 756 WP_235088397.1 peptidoglycan editing factor PgeF -
  HQN78_RS05250 (HQN78_05165) rluD 1090882..1091985 (-) 1104 WP_107798796.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HQN78_RS05255 (HQN78_05170) comL 1091984..1092775 (+) 792 WP_107798797.1 outer membrane protein assembly factor BamD Machinery gene
  HQN78_RS05260 (HQN78_05175) - 1092918..1094432 (+) 1515 WP_235088400.1 hypothetical protein -
  HQN78_RS05265 (HQN78_05180) - 1094493..1094831 (-) 339 WP_019100167.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30332.42 Da        Isoelectric Point: 6.9811

>NTDB_id=446904 HQN78_RS05255 WP_107798797.1 1091984..1092775(+) (comL) [Chromobacterium sp. Beijing]
MKRYVVAAMLVMGLAGCATTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLEARFPYGRYAQQAQMDLAYTHYK
DNEPEQAIASADRFIKLHPTHPNLDYIYYLKGLVFYNDDSGLLAKWAGQDMSERDPRAAREAFAAFRELVTRFPNSIYKE
DASKKMERLLDALGGNEMHVARYYMKRGAYLAAANRAQGVVKSYANTKYPEEALGIMVAAYDKLSMPQLRDDAKRVLALN
YPNSEYLKEGWSIEDMPWWKLWK

Nucleotide


Download         Length: 792 bp        

>NTDB_id=446904 HQN78_RS05255 WP_107798797.1 1091984..1092775(+) (comL) [Chromobacterium sp. Beijing]
ATGAAAAGATACGTTGTCGCTGCAATGTTGGTGATGGGGCTTGCCGGTTGTGCAACCACGGAAACCTACGATGAGACTCG
CGGCTGGACCGTGGAAAAGCTGTATTCGGAAGCGCATGATGAGTTGAACAGCGGCAATTATACCCGCGCTGTCAAGCTCT
ACGAAACGCTGGAAGCGCGTTTCCCTTACGGGCGCTACGCCCAGCAGGCGCAGATGGACCTGGCTTACACCCATTACAAG
GATAATGAGCCGGAGCAGGCCATCGCCTCCGCCGACCGTTTTATCAAGCTTCATCCCACCCATCCAAACCTGGACTACAT
CTATTATCTGAAAGGCTTGGTGTTTTACAACGATGATTCCGGGCTGCTGGCCAAATGGGCCGGTCAGGACATGAGCGAGC
GCGATCCGCGCGCCGCGCGCGAGGCTTTCGCCGCCTTCCGCGAGCTGGTGACGCGCTTCCCCAACAGCATTTACAAGGAA
GACGCCTCCAAGAAGATGGAGCGGCTGCTGGACGCGCTGGGCGGCAACGAGATGCACGTGGCCCGTTATTACATGAAGCG
CGGCGCTTACCTGGCGGCGGCCAACCGCGCCCAGGGCGTGGTGAAGAGTTACGCCAACACCAAGTATCCGGAAGAGGCAT
TGGGCATCATGGTGGCGGCTTACGACAAGCTGTCCATGCCGCAGCTGCGCGACGACGCCAAGCGCGTGTTGGCGCTGAAC
TACCCCAATAGCGAATACCTGAAAGAAGGCTGGTCCATCGAGGACATGCCGTGGTGGAAGCTGTGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T5NGN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

58.271

100

0.589
  comL Neisseria gonorrhoeae MS11

57.143

100

0.578