Detailed information NTG0446876

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HPQ68_RS03040
• Genome accession: NZ_CP053748
• Coordinates: 680394..681263 (+)
• Length: 289 a.a.
• NCBI ID: WP_304665260.1
• Uniprot ID: -
• Organism: Massilia sp. erpn
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 675394..686263

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPQ68_RS03010 (HPQ68_03005)	-	675504..676064 (+)	561	WP_255756398.1	hypothetical protein	-
HPQ68_RS03015 (HPQ68_03010)	-	676061..677608 (-)	1548	WP_255756399.1	sigma 54-interacting transcriptional regulator	-
HPQ68_RS03020 (HPQ68_03015)	-	677820..678266 (+)	447	WP_255756401.1	hypothetical protein	-
HPQ68_RS03025 (HPQ68_03020)	-	678263..678877 (-)	615	WP_255756402.1	hypothetical protein	-
HPQ68_RS03030 (HPQ68_03025)	-	678928..679623 (-)	696	WP_255756403.1	hypothetical protein	-
HPQ68_RS03035 (HPQ68_03030)	-	679828..680313 (+)	486	WP_255756404.1	hypothetical protein	-
HPQ68_RS03040 (HPQ68_03035)	pilD	680394..681263 (+)	870	WP_304665260.1	A24 family peptidase	Machinery gene
HPQ68_RS03045 (HPQ68_03040)	coaE	681294..681944 (+)	651	WP_255756405.1	dephospho-CoA kinase	-
HPQ68_RS03050 (HPQ68_03045)	zapD	682009..682764 (+)	756	WP_176347444.1	cell division protein ZapD	-
HPQ68_RS03055 (HPQ68_03050)	yacG	682777..682962 (+)	186	WP_050409294.1	DNA gyrase inhibitor YacG	-
HPQ68_RS03060 (HPQ68_03055)	-	682966..683370 (-)	405	WP_255756406.1	NUDIX domain-containing protein	-
HPQ68_RS03065 (HPQ68_03060)	-	683367..684248 (-)	882	WP_255756407.1	ATP-binding protein	-
HPQ68_RS03070 (HPQ68_03065)	argJ	684252..685490 (-)	1239	WP_255756408.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31037.75 Da
• Isoelectric Point: 8.0295

>NTDB_id=446876 HPQ68_RS03040 WP_304665260.1 680394..681263(+) (pilD) [Massilia sp. erpn]
MLEETLLFAPAANLAATIVAGIFGLMIGSFLNVVIYRLPKMMQRESDNYVAAESGKQLPHTDRFNLMVPRSACSHCGHQV
TALENIPVFSWLALRGKCSSCKNPISARYPAIEMLTALLSAALVWQFGSGFMGLATLVFAWMLIAMTFIDADTQLLPDDL
TYPLLWAGLLVNLNGTFVPLRDAVIGAAAGYLALWSIYWLFKLATGKEGMGYGDFKLLAALGAWLGWAMLPSIILLSSVV
GAVAGICLIVFARHGRNNPIPFGPYLAAAGMIALIFGAPISRFTSSLAG

Nucleotide

• Length: 870 bp

>NTDB_id=446876 HPQ68_RS03040 WP_304665260.1 680394..681263(+) (pilD) [Massilia sp. erpn]
ATGCTCGAAGAAACCCTGTTGTTCGCGCCCGCGGCCAACCTTGCCGCCACCATTGTCGCCGGCATTTTCGGCCTGATGAT
AGGCAGCTTCCTGAACGTGGTGATCTACCGCCTGCCAAAGATGATGCAGCGCGAGTCGGATAATTATGTGGCGGCCGAAT
CGGGCAAGCAGCTGCCGCATACCGACCGCTTCAACCTGATGGTACCGCGTTCGGCCTGCTCGCATTGCGGCCATCAGGTG
ACGGCGCTGGAGAATATTCCGGTGTTCAGCTGGCTGGCCCTGCGCGGCAAGTGCAGCAGCTGCAAAAACCCGATCTCGGC
GCGTTATCCGGCCATCGAAATGCTGACTGCCCTGCTGTCGGCGGCCCTGGTCTGGCAGTTCGGCAGCGGCTTTATGGGCC
TGGCCACCCTGGTCTTTGCCTGGATGCTGATCGCCATGACCTTCATCGACGCCGACACCCAGCTGCTGCCGGACGATCTG
ACCTACCCGCTGCTGTGGGCCGGCCTGCTGGTGAATCTGAACGGCACCTTCGTGCCGCTGCGCGACGCCGTGATCGGCGC
CGCCGCCGGCTATCTGGCGCTATGGAGCATCTACTGGCTCTTCAAGCTGGCGACAGGCAAGGAAGGAATGGGGTATGGTG
ACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTGGGCTGGGCCATGCTGCCTTCGATCATCCTGCTGTCTTCGGTGGTG
GGCGCAGTGGCCGGCATCTGCCTGATTGTCTTTGCGCGGCATGGCCGCAACAACCCGATTCCCTTTGGCCCTTATCTGGC
GGCGGCGGGCATGATCGCGCTGATCTTCGGTGCGCCCATCAGCCGTTTCACCAGCAGCCTGGCGGGCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.895	92.042	0.533
pilD	Vibrio campbellii strain DS40M4	55.797	95.502	0.533
pilD	Acinetobacter baumannii D1279779	50.183	94.464	0.474
pilD	Acinetobacter nosocomialis M2	49.084	94.464	0.464
pilD	Neisseria gonorrhoeae MS11	50.575	90.311	0.457