Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPELS_RS07315 | Genome accession | NC_017063 |
| Coordinates | 1521028..1521603 (-) | Length | 191 a.a. |
| NCBI ID | WP_001203612.1 | Uniprot ID | - |
| Organism | Helicobacter pylori ELS37 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1516028..1526603
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPELS_RS07305 (HPELS_07580) | - | 1517708..1518958 (-) | 1251 | WP_000580121.1 | restriction endonuclease subunit S | - |
| HPELS_RS07310 (HPELS_07585) | - | 1518955..1520994 (-) | 2040 | WP_000879239.1 | class I SAM-dependent DNA methyltransferase | - |
| HPELS_RS07315 (HPELS_07590) | comFC | 1521028..1521603 (-) | 576 | WP_001203612.1 | ComF family protein | Machinery gene |
| HPELS_RS07320 (HPELS_07595) | tmk | 1521591..1522166 (-) | 576 | WP_000289697.1 | dTMP kinase | - |
| HPELS_RS07325 (HPELS_07600) | coaD | 1522170..1522643 (-) | 474 | WP_001169236.1 | pantetheine-phosphate adenylyltransferase | - |
| HPELS_RS07330 (HPELS_07605) | - | 1522643..1523206 (-) | 564 | WP_000780111.1 | UbiX family flavin prenyltransferase | - |
| HPELS_RS07335 (HPELS_07615) | flgA | 1523216..1523872 (-) | 657 | WP_000699042.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPELS_RS07340 (HPELS_07620) | uvrD | 1523869..1525914 (-) | 2046 | WP_000505300.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21249.76 Da Isoelectric Point: 8.6744
>NTDB_id=44680 HPELS_RS07315 WP_001203612.1 1521028..1521603(-) (comFC) [Helicobacter pylori ELS37]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIGELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAVDDKIKSFYSHSAVLLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANNPRDFTFRGDENLDYFLLDDII
TTGTTLKEALKYLKTLNTKVHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIGELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAVDDKIKSFYSHSAVLLKGFCQGNLKPTYGTLRATNAVSYAGKSLEFRANNPRDFTFRGDENLDYFLLDDII
TTGTTLKEALKYLKTLNTKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=44680 HPELS_RS07315 WP_001203612.1 1521028..1521603(-) (comFC) [Helicobacter pylori ELS37]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAGATAGGAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCGTTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGTGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAACCCACTTATGGGACTTTAAGGGCGACTAATGCTGTTTCATATGCCGGTAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGGATTTCACTTTCAGGGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACACAAAAGTGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAGATAGGAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCTTACAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCGTTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGTGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAACCCACTTATGGGACTTTAAGGGCGACTAATGCTGTTTCATATGCCGGTAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGGATTTCACTTTCAGGGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACTCTAAACACAAAAGTGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |